Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq4025 91.5 3e-13
>seq4025
Length=183848
Score = 91.5 bits (100), Expect = 3e-13
Identities = 202/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Plus
Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCC-CTT 135695
||||||||| | || ||||||| || ||||||| || |||| | || ||||| ||
Sbjct 149053 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCACTG 149112
Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755
||| ||||| || | || ||||| ||||| || || |||||||| | || | |
Sbjct 149113 GACG-CAAATTCGATGGCGAAAATTTGCAATGGAATTTGTGATAATTTGTTAACAAGTTT 149171
Query 135756 TGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815
|| |||| |||||| || || || | | ||||| ||||||||||| ||
Sbjct 149172 GGTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACAT 149231
Query 135816 GTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCAT 135872
||||||||| || | || | ||||| || || | | | ||| || | || ||||
Sbjct 149232 GTGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAA 149291
Query 135873 AGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932
|||| | ||||| || ||| || || || || ||| || |||||||||||||
Sbjct 149292 AGAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 149351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923149209204960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |