Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2324 111 2e-19 seq4090 105 8e-18 seq331 105 8e-18 seq1118 100 3e-16 >seq2324 Length=348778 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| || Sbjct 166970 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 167029 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 167030 ACTCACCACTATACTACCGAGGAT 167053 >seq4090 Length=177276 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 86191 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 86132 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 86131 TACTACCGAGGAT 86119 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 86888 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 86829 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 86828 TACTACCGAGGAT 86816 >seq331 Length=588470 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 516842 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 516901 Query 60126 TACTACCGAGGATTGA 60141 |||||||||||| ||| Sbjct 516902 TACTACCGAGGACTGA 516917 >seq1118 Length=60354 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||| | ||| || ||| |||| |||| ||||||||||||| |||| |||||||||| Sbjct 33308 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 33367 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||||||||||||||||| ||||| Sbjct 33368 AGGCGGGAATACTCACCACTATACTACGGAGGA 33400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571788122802720