Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2324 111 2e-19
seq4090 105 8e-18
seq331 105 8e-18
seq1118 100 3e-16
>seq2324
Length=348778
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|| |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 166970 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 167029
Query 60115 ACTCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||||
Sbjct 167030 ACTCACCACTATACTACCGAGGAT 167053
>seq4090
Length=177276
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 86191 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 86132
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 86131 TACTACCGAGGAT 86119
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 86888 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 86829
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 86828 TACTACCGAGGAT 86816
>seq331
Length=588470
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 516842 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 516901
Query 60126 TACTACCGAGGATTGA 60141
|||||||||||| |||
Sbjct 516902 TACTACCGAGGACTGA 516917
>seq1118
Length=60354
Score = 100 bits (110), Expect = 3e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104
|||| | ||| || ||| |||| |||| ||||||||||||| |||| ||||||||||
Sbjct 33308 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 33367
Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137
|||||| ||||||||||||||||||| |||||
Sbjct 33368 AGGCGGGAATACTCACCACTATACTACGGAGGA 33400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571788122802720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |