Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1327 143 2e-29 seq3708 96.9 3e-15 seq3681 91.5 1e-13 seq3029 91.5 1e-13 seq1681 87.8 2e-12 seq929 86.0 6e-12 >seq1327 Length=48099 Score = 143 bits (158), Expect = 2e-29 Identities = 259/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 21778 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 21719 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 21718 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 21659 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || | ||| ||| || ||||||||||||||||| || || || ||| | Sbjct 21658 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 21604 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || || ||||| ||| | | ||||| | || || | | | || ||| Sbjct 21603 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 21545 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || || ||||| || |||||||| |||||||| ||| |||| Sbjct 21544 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 21485 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 21484 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 21425 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 21424 TCGTGACGAGG 21414 >seq3708 Length=1771 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 1494 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 1435 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || ||| Sbjct 1434 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 1375 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || |||||||| || Sbjct 1374 CAACGTTTGATTTTCGCTGGTAA 1352 >seq3681 Length=661693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 19250 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19309 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 19310 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 19369 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 19370 CAACGTCTGATTTTTGCTGG 19389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 10318 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 10377 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 10378 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 10437 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 10438 CAACGTTTGATTTTTGCTGGTAA 10460 >seq3029 Length=236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 7 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 66 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 67 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 126 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 127 CAACGTCTGATTTTTGCTGG 146 >seq1681 Length=34527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 29984 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 30043 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 30044 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 30103 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 30104 CAACGTTTGATTTTTGCTGGTAA 30126 >seq929 Length=70851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| || Sbjct 57586 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 57645 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 57646 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 57705 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 57706 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 57740 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 57965 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 58024 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 58025 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 58059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743420742080