Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1548 87.8 4e-12 >seq1548 Length=388575 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||||| ||||||||||| || | || | || ||| Sbjct 336889 TTTTGGAGAGGAGTGGTCGAAGAACTGCTTTGGTTCATCAGTGGAAGCACCAATGCTAAA 336830 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||| ||| | | ||| || | ||||| | ||| Sbjct 336829 CAGCTTTCAGAGAAGAATGTTAACATTTGGGATGGAAATTCTTCCAGAGAATTCCTAGAC 336770 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 |||||||| | ||| || | ||| || |||||||| || || || || ||||||||| Sbjct 336769 AGTAGAGGACTGTACAATTATGAAGAAGGTGATTTGGGGCCTGTTTATGGTTTCCAATGG 336710 Query 35429 CGTCATTTTGG 35439 || || ||||| Sbjct 336709 CGCCACTTTGG 336699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989531711618420