Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq929 87.8 2e-12 >seq929 Length=70851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 || ||||||| ||| ||||| |||||||| || ||| |||| ||||| |||||||| Sbjct 56043 TTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATT 56102 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942 |||| ||| || || | || | |||| | || ||| || || ||| || Sbjct 56103 GATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCA 56162 Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002 || || || || || || || ||||| |||| | |||||||| || || ||||||||| Sbjct 56163 ATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACC 56222 Query 37003 GTTTTATA 37010 || || || Sbjct 56223 GTCTTGTA 56230 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || |||| Sbjct 57985 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 58044 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||||| || |||| | | ||||||||| || || ||| || Sbjct 58045 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 58103 Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || || || || || | ||||| || || ||| ||||||||||||| |||| ||| Sbjct 58104 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 58163 Query 38471 TATATGT 38477 |||| || Sbjct 58164 TATAAGT 58170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468500647546560