Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq929 87.8 2e-12
>seq929
Length=70851
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882
|| ||||||| ||| ||||| |||||||| || ||| |||| ||||| ||||||||
Sbjct 56043 TTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATT 56102
Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942
|||| ||| || || | || | |||| | || ||| || || ||| ||
Sbjct 56103 GATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCA 56162
Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002
|| || || || || || || ||||| |||| | |||||||| || || |||||||||
Sbjct 56163 ATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACC 56222
Query 37003 GTTTTATA 37010
|| || ||
Sbjct 56223 GTCTTGTA 56230
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || ||||
Sbjct 57985 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 58044
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || |||| | | ||||||||| || || ||| ||
Sbjct 58045 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 58103
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || || || || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 58104 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 58163
Query 38471 TATATGT 38477
|||| ||
Sbjct 58164 TATAAGT 58170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468500647546560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |