Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 86.0 6e-12
seq2423 86.0 6e-12
>seq3681
Length=661693
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337
>seq2423
Length=9717
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 3138 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 3197
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 3198 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 3257
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 3258 ACGTTTTCACAAATATCTGCAT 3279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496038427900800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |