Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq929 140 5e-28 >seq929 Length=70851 Score = 140 bits (154), Expect = 5e-28 Identities = 209/294 (71%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| | || ||||||||| | |||||||| |||||||| Sbjct 56661 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 56720 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || ||| Sbjct 56721 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAA 56780 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA--GATCTTGTG 79396 || ||||| || | ||||| |||||||| ||||| |||||||| | |||| | Sbjct 56781 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCT--AG 56838 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 ||||| | ||||| ||||| | | |||||| || || || |||||||| |||| Sbjct 56839 CTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 56898 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 ||||||| || |||| ||| | || ||||| |||| || | ||| ||||| Sbjct 56899 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---GAAAAGGAT 56949 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| ||||| ||||| | | ||| || || || | | ||||||||| || Sbjct 56007 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56066 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| |||||||||||||| || | ||| | |||| |||| Sbjct 56067 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 56126 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 56127 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 56186 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| ||||| | ||||||||||| Sbjct 56187 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 56220 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 |||||| ||| ||||| || ||||| | ||| | |||||||||||||| | ||| ||| Sbjct 57503 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 57562 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 |||| ||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 57563 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 57622 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 57623 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 57682 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || | | || || | ||||| |||||||| || Sbjct 57683 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 57717 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 56429 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 56488 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || || ||||| || ||||| || |||| ||| || Sbjct 56489 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 56548 Query 79179 ACTATTTCTAAGACCGTA 79196 |||||| ||||| || Sbjct 56549 CGAATTTCTCAGACCATA 56566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718231773243360