Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq929 120 4e-22 >seq929 Length=70851 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| || |||||||| | | ||| | || || | | ||||||||| || Sbjct 56007 TTGTCCACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 56066 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| ||||| |||| ||||| |||||||| || | ||| | ||| | || Sbjct 56067 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 56126 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 ||||||||||||||||||| |||||| ||| || ||||| |||||||| || || ||| Sbjct 56127 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 56186 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005 || | ||||| ||||| | ||||||||||| Sbjct 56187 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 56220 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||||||||||||||| || | || | |||||| || | ||| || |||| ||| || Sbjct 56429 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 56488 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| | Sbjct 56489 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 56548 Query 71262 ACTATTTCTAAGACCAT 71278 |||||| ||||||| Sbjct 56549 CGAATTTCTCAGACCAT 56565 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 |||||| ||| ||||| || ||||| || | |||||||||||||||| || ||| Sbjct 57503 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 57562 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 |||| |||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 57563 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 57622 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 57623 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 57682 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || | | || || | ||||| |||||||| || Sbjct 57683 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 57717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671104602774240