Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq929 105 1e-17 >seq929 Length=70851 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAA-- 96963 || ||||| ||||||||||||||||| ||| | ||||| ||| | || ||| |||| Sbjct 57723 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGAC--GCGAAAAAGA 57666 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| |||||| | || ||||||||||| |||||| | || ||| Sbjct 57665 ACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGATACCTGATC 57606 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 | |||||||||||| | | | || || | ||| || |||||||| | | | Sbjct 57605 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 57546 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 57545 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 57512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741020998398240