Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3708 107 1e-18 seq3681 105 5e-18 seq1681 105 5e-18 seq1493 105 5e-18 seq3029 100 2e-16 seq2639 96.9 3e-15 seq2423 96.9 3e-15 seq1996 96.9 3e-15 seq2781 93.3 3e-14 >seq3708 Length=1771 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||| || |||||| | ||||||||||| || || |||||||||||| || || Sbjct 1346 AATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 1405 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| | |||||| | ||||| ||||| |||||| |||||||| || ||||| Sbjct 1406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 1465 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || |||||||||||||| Sbjct 1466 CCGGTAAGAGTCTTAACAAAAATTTGCAT 1494 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| | | ||||| | |||| |||||| || || ||||||||||||||| || Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||||| |||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747 Query 15334 ACCTGTCAGAGTTTTTACAAAAAT 15357 || || ||||| || |||||||| Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771 >seq3681 Length=661693 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || |||||||||||| || || ||||| Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | |||||| | ||||| ||||| |||||| |||||||| || ||||| || || Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||||||||| Sbjct 10340 AGAGTCTTAACAAAAATTTGCAT 10318 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||||||||| || |||||||| Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 10054 GTCTTAACAAAAATTTGCAT 10035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||||||||| ||| ||||||||| ||||| || |||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || |||||||||||| || || ||||||| Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 19269 GTCTTAACAAAAATTTGCAT 19250 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||||||||||||| || |||||||||||| || || ||||| | Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| |||||| || || || || ||||| || || || Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 18989 GTCTTAACGAAAATTTGCAT 18970 >seq1681 Length=34527 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || |||||||||||| || || ||||| Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | |||||| | ||||| ||||| |||||| |||||||| || ||||| || || Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||||||||| Sbjct 30006 AGAGTCTTAACAAAAATTTGCAT 29984 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||||||||| || ||| |||| Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 29720 GTCTTAACAAAAATTTGCAT 29701 >seq1493 Length=366 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15238 ACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTAT 15297 ||||||||| || ||||||||||||||| || |||||||| |||||| | ||||| Sbjct 364 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 305 Query 15298 GGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 ||||| |||||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 304 TGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAAT 245 Query 15358 TTGCAT 15363 |||||| Sbjct 244 TTGCAT 239 >seq3029 Length=236 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || |||||||||||| || || ||||||| Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 26 GTCTTAACAAAAATTTGCAT 7 >seq2639 Length=264 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15238 ACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTAT 15297 ||||||||| || ||||||||||||||| || |||||||| |||||| | ||||| Sbjct 262 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 203 Query 15298 GGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 ||||| |||||| |||||||| || ||||| || || || || || || ||||| Sbjct 202 TGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAAT 143 Query 15358 TTGCAT 15363 |||||| Sbjct 142 TTGCAT 137 >seq2423 Length=9717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||||||||| ||| ||||||||| ||||| || |||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || ||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCAT 3611 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | |||||||||||||| || ||||||||| ||||| || | Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| | || ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||||||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCAT 2466 >seq1996 Length=320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||| || ||||| | |||||||||||||| || |||||||||||| || || Sbjct 178 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 237 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||||| |||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 238 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 297 Query 15335 CCTGTCAGAGTTTTTACAAAAAT 15357 || || ||||| || |||||||| Sbjct 298 CCGGTAAGAGTCTTAACAAAAAT 320 >seq2781 Length=253 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | |||||||||||||| || ||||||||| ||||| || | Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| | || ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||||||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCAT 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362160996420684