Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq266 91.5 1e-13
seq99 91.5 1e-13
>seq266
Length=548
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 206 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 265
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||||| ||||| || || | || |||||||| || |||||
Sbjct 266 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 325
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 326 GTTTTCACAAAAATCTGCAT 345
>seq99
Length=156819
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 40115 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 40174
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||||| ||||| || || | || |||||||| || |||||
Sbjct 40175 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 40234
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 40235 GTTTTCACAAAAATCTGCAT 40254
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 39949 GTTTTCACAAAAATCTGCAT 39968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354759768434352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |