Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq99 127 5e-24
seq3681 120 7e-22
seq2423 118 2e-21
seq1681 111 4e-19
seq2781 107 4e-18
seq3029 105 2e-17
seq3708 98.7 2e-15
seq2639 96.9 8e-15
seq1996 95.1 3e-14
seq1493 91.5 3e-13
>seq99
Length=156819
Score = 127 bits (140), Expect = 5e-24
Identities = 116/144 (81%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 40852
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 40853 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 40912
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || |||||||||||
Sbjct 40913 AAGTGTCTTCACGAATATCTGCAT 40936
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || |||||||| || || ||||| ||||| ||||| || |
Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || ||||| || | ||| || || || ||||| | |
Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948
Query 104540 GTTTTTACAAATATCTGCATT 104560
||||| ||||| |||||||||
Sbjct 39949 GTTTTCACAAAAATCTGCATT 39969
>seq3681
Length=661693
Score = 120 bits (132), Expect = 7e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || ||||| || || || ||||| || || |||||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 18356 GTTTTCACAAATATCTGCAT 18337
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| || ||||||||||| | | |||||||| || || |||||||| ||||||||
Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
|| || |||||||||| |||| ||||| |||||||| |||| || || || ||
Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 10347
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| || || ||||| || ||||||
Sbjct 10346 CCGGTAAGAGTCTTAACAAAAATTTGCATT 10317
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||||||||| ||||| || ||
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || |||||
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || || ||||| ||||| || || | || || || || ||||| ||
Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 19553
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 19552 GTCTTAACAAAAATTTGCATT 19532
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||| |||||||| || || ||
Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || |||||
Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 19269 GTCTTAACAAAAATTTGCATT 19249
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || ||
Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| |||||||| || | || || || || ||||||||
Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 18989 GTCTTAACGAAAATTTGCATT 18969
>seq2423
Length=9717
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 3260 GTTTTCACAAATATCTGCAT 3279
Score = 118 bits (130), Expect = 2e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || ||||| || || || ||||| || || |||||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 104537 AGTGTTTTTACAAATATCTGCATTT 104561
|| ||||| ||||||||||||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| || || ||||| |||||||| |||||
Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 2440
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || || ||||||
Sbjct 2441 GTAAGGGTCTTAACGAAAATTTGCATT 2467
>seq1681
Length=34527
Score = 111 bits (122), Expect = 4e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||||||||| |||||||| ||
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || |||||
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| || ||||||||||| | | |||||||| || || |||||||| ||||||||
Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
|| || |||||||||| |||| ||||| |||||||| |||| || || || ||
Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 30013
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| || || ||||| || ||||||
Sbjct 30012 CCGGTAAGAGTCTTAACAAAAATTTGCATT 29983
>seq2781
Length=253
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| || || ||||| |||||||| |||||
Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 66
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || || ||||||
Sbjct 65 GTAAGGGTCTTAACGAAAATTTGCATT 39
>seq3029
Length=236
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||| |||||||| || || ||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| |||| || || || || || |||||
Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
>seq3708
Length=1771
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || |||||||||||||| ||||| || ||
Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || |||||
Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 1757
Query 104540 GTTTTTACAAATAT 104553
|| || ||||| ||
Sbjct 1758 GTCTTAACAAAAAT 1771
>seq2639
Length=264
Score = 96.9 bits (106), Expect = 8e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|||||||| || || |||||||||||||| ||||| || |||||||||| |||| |||
Sbjct 258 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 199
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| |||||||| |||| || || || || || ||||| || || || || || |||
Sbjct 198 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTTGC 139
Query 104558 ATT 104560
|||
Sbjct 138 ATT 136
>seq1996
Length=320
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || |||||||| |||||||| || ||
Sbjct 184 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 243
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||||||||| |||| ||||| |||||||| || | || || || || || |||
Sbjct 244 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 303
Query 104537 AGTGTTTTTACAAATAT 104553
|| || || ||||| ||
Sbjct 304 AGAGTCTTAACAAAAAT 320
>seq1493
Length=366
Score = 91.5 bits (100), Expect = 3e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497
|||||||| || || |||||||||||||| ||||| || |||||||||| |||| |||
Sbjct 360 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 301
Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557
|| |||||||| |||| || || || || || || || || || || || || |||
Sbjct 300 TCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTTGC 241
Query 104558 ATT 104560
|||
Sbjct 240 ATT 238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151337561547792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |