Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3869 199 6e-47
seq1107 150 3e-32
seq3647 149 1e-31
seq1195 141 1e-29
>seq3869
Length=201556
Score = 199 bits (220), Expect = 6e-47
Identities = 208/273 (76%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || ||
Sbjct 103950 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCTGCGAT 103891
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| ||||||||||| || |||||| || || ||| | |||||||| |
Sbjct 103890 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 103831
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| |||
Sbjct 103830 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 103771
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | || ||||| || |||||||| | || ||||| |||||| | |||||
Sbjct 103770 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 103711
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704
||| | |||||||| || || |||||| |||
Sbjct 103710 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 103678
>seq1107
Length=1100865
Score = 150 bits (166), Expect = 3e-32
Identities = 198/272 (73%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||||| | | || |||||||| ||||||||||| || || || ||
Sbjct 942652 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 942593
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||| |||||||| || ||||| || || ||| |||||||||| | |
Sbjct 942592 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 942533
Query 16553 CGTGATGTTTTGAAGATCTTC-CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| ||||| || | | ||| | | |||||| || ||| ||
Sbjct 942532 CGAGCTGTGTTGAA-ATCTTTTCTTGAAAATGTTGTTCGAGATGCTGTCACCTACTGTGA 942474
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || ||| | || || || ||| | |||||| | ||||||||||||||| | |||||
Sbjct 942473 ACATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGG 942414
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| | |||||||||||||| |||||| ||
Sbjct 942413 TCGAACCATTTATGGTTTTGGTGGTTAATTTT 942382
>seq3647
Length=249903
Score = 149 bits (164), Expect = 1e-31
Identities = 189/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| | | | | | || ||||| || |||||||| || || ||||| ||
Sbjct 160936 GCTAAGCGTCACAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 160877
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||||||||||| || |||||| | || || || | ||||||||||
Sbjct 160876 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 160817
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||| || | | | |||| | | |||||| | ||| |||
Sbjct 160816 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 160757
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||||||||| || | |||||| | || ||||| | ||||||||||||
Sbjct 160756 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 160697
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||| || || ||
Sbjct 160696 CGAACTATTTACGGCTTCGG 160677
>seq1195
Length=57563
Score = 141 bits (156), Expect = 1e-29
Identities = 196/273 (72%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | | || |||||||| || |||||||| || || || ||
Sbjct 50089 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 50030
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 50029 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 49970
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| |||||| ||| ||| | | |||||| || ||| |||
Sbjct 49969 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 49910
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| ||||| | |||||| | || ||||| |||||| | |||||
Sbjct 49909 CATGCAAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 49850
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704
|| | || ||||||||||| ||||| |||||
Sbjct 49849 CGAACCATCTATGGTTTTGGTGGTTAATTCTTC 49817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071429397932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |