Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq929 87.8 2e-12
>seq929
Length=70851
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/220 (69%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172
||||||||| ||||| | | |||| || |||||||||||||||||||| || |||||
Sbjct 56012 CACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 56071
Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229
| |||||| | ||| ||| || || |||| || ||| ||| | || |
Sbjct 56072 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 56128
Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289
||| | || ||| | ||| ||| || || ||| | | ||||| || ||||||||
Sbjct 56129 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCAT 56188
Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329
||| | || |||||| |||||||||| | ||||||
Sbjct 56189 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 56228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478637724953280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |