Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq929 87.8 2e-12 >seq929 Length=70851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||| ||||| | | |||| || |||||||||||||||||||| || ||||| Sbjct 56012 CACGGTGAACTGAATAGCCGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 56071 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229 | |||||| | ||| ||| || || |||| || ||| ||| | || | Sbjct 56072 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 56128 Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 ||| | || ||| | ||| ||| || || ||| | | ||||| || |||||||| Sbjct 56129 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCAT 56188 Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329 ||| | || |||||| |||||||||| | |||||| Sbjct 56189 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478637724953280