Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1548 132 1e-25 seq929 84.2 6e-11 >seq1548 Length=388575 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||||||||| || |||||||| || | ||||| ||| | ||||||||||| || || Sbjct 336917 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAACTGCTTTG 336858 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||| || | ||||| || ||||| || | ||| ||| || ||||| || |||||||| Sbjct 336857 GTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTTAACATTTGGGA 336798 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGGT 111491 ||||||| || | || || ||||| |||| || || | | | ||||||||| Sbjct 336797 TGGAAATTCTTCCAGAGAATTCCTAGA--CAGTAGAGGACTGTACAATTATGAAGAAGGT 336740 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 ||| | || || ||||| || || ||||||||||||||||| Sbjct 336739 GATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 336699 >seq929 Length=70851 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 57732 GGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 57674 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| || || ||| || || || ||| |||| ||||| || ||| | Sbjct 57673 GAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGCCCTCTGGAT 57614 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 57613 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 57554 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 |||||||| || | | ||| | ||||| || || | || ||||||||||||| Sbjct 57553 TGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 57494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303284732424968