Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4023 122 6e-23 seq4008 122 6e-23 seq3939 122 6e-23 seq3885 122 6e-23 seq3884 122 6e-23 seq3572 122 6e-23 seq3535 122 6e-23 seq3489 122 6e-23 seq1636 122 6e-23 seq156 122 6e-23 seq3483 111 1e-19 seq2876 111 1e-19 seq2423 91.5 1e-13 seq3681 86.0 4e-12 seq99 82.4 5e-11 >seq4023 Length=879 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq4008 Length=905 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq3939 Length=1029 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 970 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 911 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 910 TGATCCATTCATACGCGTCACTAATTAGATGACGA 876 >seq3885 Length=1115 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq3884 Length=1116 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq3572 Length=2749 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 2690 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 2631 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 2630 TGATCCATTCATACGCGTCACTAATTAGATGACGA 2596 >seq3535 Length=3263 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 571 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 630 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 631 TGATCCATTCATACGCGTCACTAATTAGATGACGA 665 >seq3489 Length=4001 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq1636 Length=36320 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 23229 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 23170 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 23169 TGATCCATTCATACGCGTCACTAATTAGATGACGA 23135 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 20602 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 20543 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||| ||| Sbjct 20542 ACGAATATTTAGTCTT 20527 >seq156 Length=627 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 60 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 119 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 120 TGATCCATTCATACGCGTCACTAATTAGATGACGA 154 >seq3483 Length=4189 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||| | | ||||| || Sbjct 4130 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGTCACAGAAGGAATCTTGT 4071 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 4070 TGATCCATTCATACGCGTCACTAATTAGATGACG 4037 >seq2876 Length=330856 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||| | | ||||| || Sbjct 316563 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGTCACAGAAGGAATCTTGT 316504 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 316503 TGATCCATTCATACGCGTCACTAATTAGATGACG 316470 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||| ||||||||||||||||| | | ||||| || Sbjct 326942 AAGCCCGTTCCCTTGGCTGTGGTTACGCTAGATAGTAGATAGGAACAGAAGGAATCTTGT 327001 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| ||||| ||||||||||||||||||||| Sbjct 327002 TGATCCATTCATACGCGTCACTAATTAGATGACG 327035 >seq2423 Length=9717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | |||| |||||||||||| ||| || Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 3260 GTTTTCACAAATATCTGCAT 3279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| ||||||||||| |||||||| || ||||| || ||||| ||| Sbjct 3281 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 3340 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| |||| |||| || || ||||| || | ||| Sbjct 3341 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 3375 >seq3681 Length=661693 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || |||||||| | || | |||||||||||| ||| || Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||| | | |||||| |||||||| | |||||| ||||| || ||||| Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357 Query 38298 GTTTTCACGAATATCTGCAT 38317 |||||||| ||||||||||| Sbjct 18356 GTTTTCACAAATATCTGCAT 18337 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || ||||||||||||| || | || ||||| ||| |||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | || || ||| ||||| | ||||| ||||| || ||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||| ||||||||||| || Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002 >seq99 Length=156819 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| |||| | ||| ||||| | || | |||||| || ||| |||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || || ||| ||||||||||| ||| |||||||| || || Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || ||||||||||||||||| Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930365135044