Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3681 91.5 1e-13 seq2423 87.8 2e-12 seq3780 84.2 2e-11 >seq3681 Length=661693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| |||||||| || Sbjct 18397 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCGGA 18452 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 18453 TCAACAGCGGCTTATTTTTGCTGG 18476 >seq2423 Length=9717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 3219 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 3164 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 3163 TCAACAGCGGCTTATTTTTGCTGG 3140 >seq3780 Length=218817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 71162 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 71221 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 71222 TACTTTGTCCGATTACAATATTCAGAAAG 71250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433306220393060