Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 91.5 1e-13
seq2423 87.8 2e-12
seq3780 84.2 2e-11
>seq3681
Length=661693
Score = 91.5 bits (100), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| |||||||| ||
Sbjct 18397 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATTCCACCGGA 18452
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 18453 TCAACAGCGGCTTATTTTTGCTGG 18476
>seq2423
Length=9717
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 3219 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 3164
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 3163 TCAACAGCGGCTTATTTTTGCTGG 3140
>seq3780
Length=218817
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| ||
Sbjct 71162 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 71221
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 71222 TACTTTGTCCGATTACAATATTCAGAAAG 71250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433306220393060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |