Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1327 208 8e-49
>seq1327
Length=48099
Score = 208 bits (230), Expect = 8e-49
Identities = 268/365 (73%), Gaps = 6/365 (2%)
Strand=Plus/Plus
Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175
||||| || || |||| ||| |||||||| || ||||| || | ||| || || || ||
Sbjct 21416 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 21475
Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235
| ||| || ||||| || || || || ||||| || || ||||| || ||||| || ||
Sbjct 21476 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 21535
Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCG 93292
|| | ||||||| |||||| ||| | | || | | |||||| |||||||| ||
Sbjct 21536 ACCAAACGTTCG-CAAAATG-GCG-ACTGACGGTCACCGATCCAGCGCAAAGCCCAGTCT 21592
Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352
||||||||||| | || || | || ||||| ||||| || || |||| ||||| ||
Sbjct 21593 GCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGCTCCACC 21652
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
| ||| || ||||| || ||||| || || |||||||| ||||||||||| || ||
Sbjct 21653 GGATCACGGATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATG 21712
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
||||||||||| || |||||| | | || || || | || | |||||| ||||||| |
Sbjct 21713 GCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATCGC 21772
Query 93473 TCTAC 93477
|| ||
Sbjct 21773 TCCAC 21777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556832093825760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |