Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2781 109 1e-18 seq2423 109 1e-18 seq1493 105 1e-17 seq99 105 1e-17 seq3681 102 2e-16 seq1681 102 2e-16 seq3708 93.3 8e-14 seq266 93.3 8e-14 seq1996 91.5 3e-13 >seq2781 Length=253 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCATT 39 >seq2423 Length=9717 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || || | | |||||| || |||||||| || || || |||||| Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||| | || || || || || || | || |||||||||||| || || |||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| || |||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCATT 2467 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 3468 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 3527 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||| | | ||| ||||||| || |||||||| || || Sbjct 3528 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 3587 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||||||| Sbjct 3588 CAGAGTTTTGACAAATATCTGCATT 3612 >seq1493 Length=366 Score = 105 bits (116), Expect = 1e-17 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG-ACGGCCTCGATGG 68397 |||||| || |||||||| ||||| || |||||||| |||||||| || ||| || | Sbjct 361 TTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCCTTTTACATTCTCTATTG 303 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 | || | || ||||||||| |||||||||||||| || || || ||||| ||||| || | Sbjct 302 TATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTT 243 Query 68458 GCATT 68462 ||||| Sbjct 242 GCATT 238 >seq99 Length=156819 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 40914 AGTGTCTTCACGAATATCTGCATAAT 40939 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || ||||||||||||||||| |||||||| || Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || || | || ||||||||||| ||||| |||||||| || | Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 39949 GTTTTCACAAAAATCTGCATT 39969 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 40115 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 40174 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 40175 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 40234 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || |||||||| Sbjct 40235 GTTTTCACAAAAATCTGCAT 40254 >seq3681 Length=661693 Score = 102 bits (112), Expect = 2e-16 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 68313 AACTGCTTC-CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||||||| || || || || | | |||||| || |||||||| |||||||| || || Sbjct 19119 AACTGCTTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 19060 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || | || || || || || || | || |||||||||||| || || ||||| Sbjct 19059 TATTTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 19000 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || |||||||| ||||| || |||||| Sbjct 18999 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 18969 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 10116 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 10115 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 10056 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 10055 AGTCTTAACAAAAATTTGCATT 10034 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| |||||||| || || || |||||| Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 19331 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 19330 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 19271 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 19270 AGTCTTAACAAAAATTTGCATT 19249 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || || ||||| || ||||| ||||||||||| | Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| | || || | || ||| |||||||| ||||||||||| || || ||| Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 19553 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 19552 GTCTTAACAAAAATTTGCATT 19532 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || || | |||||| ||||||||||| || || || || ||||| || Sbjct 18148 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 18089 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||| | | ||| ||||||| || |||||||| || || Sbjct 18088 ACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 18029 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||| Sbjct 18028 CAGAGTTTTCACAAATATCTGCATT 18004 >seq1681 Length=34527 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || ||||||||||| | Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||| Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700 >seq3708 Length=1771 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||| || || |||||||| ||||| || |||||||| |||||| Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT-TTTGCC 1696 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || || || | || |||||||||||||||||| ||||| || || || Sbjct 1697 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 1756 Query 68441 GGTCTTGACGAATAT 68455 ||||| || || || Sbjct 1757 AGTCTTAACAAAAAT 1771 >seq266 Length=548 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 206 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 265 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || || |||| || ||||||||||| ||||| |||||||| || | Sbjct 266 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 325 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || || || ||||||||| Sbjct 326 GTTTTCACAAAAATCTGCATT 346 >seq1996 Length=320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || || | | |||||| || |||||||| |||||||| || || || || Sbjct 183 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 241 Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 |||||| || ||| || || || | || |||||||||||||||||| ||||| || | Sbjct 242 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 301 Query 68437 TGAGGGTCTTGACGAATAT 68455 | || ||||| || || || Sbjct 302 TAAGAGTCTTAACAAAAAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921574890365280