Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3681 89.7 4e-13 seq1681 86.0 5e-12 seq2423 82.4 6e-11 >seq3681 Length=661693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| ||||| ||||||||||||||||| |||||| Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 18027 AGAGTTTTCACAAATATCTGCAT 18005 >seq1681 Length=34527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || ||||| || || || || ||||| |||||||| || |||||| Sbjct 29842 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGC 29783 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | || | || || | | ||| || |||| ||| | |||||||||||| | Sbjct 29782 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29723 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 |||| || |||||||| ||||| Sbjct 29722 GAGTCTTAACAAAAATTTGCAT 29701 >seq2423 Length=9717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| ||||| | || ||| || |||| || | ||||| || ||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCAT 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420113283519888