Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2423 102 2e-16 seq3681 98.7 2e-15 seq3708 93.3 1e-13 seq2639 93.3 1e-13 seq1681 93.3 1e-13 seq1493 93.3 1e-13 seq111 93.3 1e-13 >seq2423 Length=9717 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCATT 3612 >seq3681 Length=661693 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| ||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 18027 AGAGTTTTCACAAATATCTGCATT 18004 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || ||||| || Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || |||||||||||||| |||| || ||||| || ||||| || || ||| Sbjct 19672 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 19616 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| || || | || ||| | ||| ||||| | |||||| || ||||| || Sbjct 19615 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 19556 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || |||||| Sbjct 19555 AGGGTCTTAACAAAAATTTGCATT 19532 >seq3708 Length=1771 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 ||||| | | || || || |||||||| || ||| ||| |||||||||||||| || Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 ||||| |||| || || ||||| | ||| | ||||||||| | |||||||| || Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747 Query 288444 CCCGGTCAGAGTCTTGACGAATAT 288467 ||||| |||||||| || || || Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771 >seq2639 Length=264 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 ||||| |||||| ||| |||||||||||||| || ||||| |||| || || ||| Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | ||||||||| | |||||||| || ||||| || ||||| ||||| Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145 Query 288466 ATCTGCATT 288474 || |||||| Sbjct 144 ATTTGCATT 136 >seq1681 Length=34527 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| |||||||||||||| || || || || Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || ||||| | ||| | ||||||||| | |||||||| || ||||| ||| Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700 >seq1493 Length=366 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 ||||| |||||| ||| |||||||||||||| || ||||| |||| || || ||| Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | ||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247 Query 288466 ATCTGCATT 288474 || |||||| Sbjct 246 ATTTGCATT 238 >seq111 Length=593702 Score = 93.3 bits (102), Expect = 1e-13 Identities = 178/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 ||||||||||||||| || ||| ||| || || | || | ||||| | |||| Sbjct 137765 GTTGATGTTATTGCTGCCCACAAAATTATGAGCCAAATTTATAATGGTGCTCATCAGACT 137706 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 ||||||| |||||||| || ||| || |||||| |||| | ||| || || || Sbjct 137705 GACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCAGCAAGCTGAGCGACTTT 137646 Query 325513 CACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGT 325570 ||| || |||| | |||||||||||| || | | ||||| ||||| ||| Sbjct 137645 CACTTC--TCGTTTATCGTTGCGCTTGAAACATGTGAACAAAACTTTACGTTGTCCAGGC 137588 Query 325571 TTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CGTACCGCGAGAACAAAAT 325629 || || |||||||| | ||| || ||||| || || || | | || ||||||||| Sbjct 137587 TTCAAGCCATCAACCATCGAAGGTATGCTACGCTCGTTATCCATGTTGC-TGAACAAAAT 137529 Query 325630 AAGTTCCTTGTCGATGAA 325647 | || ||||||||||| Sbjct 137528 CAACTCTTTGTCGATGAA 137511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179592068536072