Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2423 102 2e-16
seq3681 98.7 2e-15
seq3708 93.3 1e-13
seq2639 93.3 1e-13
seq1681 93.3 1e-13
seq1493 93.3 1e-13
seq111 93.3 1e-13
>seq2423
Length=9717
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATT 3612
>seq3681
Length=661693
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| |||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATT 18004
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || ||||| ||
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || |||||||||||||| |||| || ||||| || ||||| || || |||
Sbjct 19672 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 19616
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| || || | || ||| | ||| ||||| | |||||| || ||||| ||
Sbjct 19615 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTT 19556
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 19555 AGGGTCTTAACAAAAATTTGCATT 19532
>seq3708
Length=1771
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383
||||| | | || || || |||||||| || ||| ||| |||||||||||||| ||
Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687
Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443
||||| |||| || || ||||| | ||| | ||||||||| | |||||||| ||
Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747
Query 288444 CCCGGTCAGAGTCTTGACGAATAT 288467
||||| |||||||| || || ||
Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771
>seq2639
Length=264
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
||||| |||||| ||| |||||||||||||| || ||||| |||| || || |||
Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465
|| | ||| | ||||||||| | |||||||| || ||||| || ||||| |||||
Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145
Query 288466 ATCTGCATT 288474
|| ||||||
Sbjct 144 ATTTGCATT 136
>seq1681
Length=34527
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| |||||||||||||| || || || ||
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || ||||| | ||| | ||||||||| | |||||||| || ||||| |||
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700
>seq1493
Length=366
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
||||| |||||| ||| |||||||||||||| || ||||| |||| || || |||
Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465
|| | ||| | ||||||||| | ||||| || || ||||| |||||||| |||||
Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247
Query 288466 ATCTGCATT 288474
|| ||||||
Sbjct 246 ATTTGCATT 238
>seq111
Length=593702
Score = 93.3 bits (102), Expect = 1e-13
Identities = 178/258 (69%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 325393 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452
||||||||||||||| || ||| ||| || || | || | ||||| | ||||
Sbjct 137765 GTTGATGTTATTGCTGCCCACAAAATTATGAGCCAAATTTATAATGGTGCTCATCAGACT 137706
Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512
||||||| |||||||| || ||| || |||||| |||| | ||| || || ||
Sbjct 137705 GACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCAGCAAGCTGAGCGACTTT 137646
Query 325513 CACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGT 325570
||| || |||| | |||||||||||| || | | ||||| ||||| |||
Sbjct 137645 CACTTC--TCGTTTATCGTTGCGCTTGAAACATGTGAACAAAACTTTACGTTGTCCAGGC 137588
Query 325571 TTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CGTACCGCGAGAACAAAAT 325629
|| || |||||||| | ||| || ||||| || || || | | || |||||||||
Sbjct 137587 TTCAAGCCATCAACCATCGAAGGTATGCTACGCTCGTTATCCATGTTGC-TGAACAAAAT 137529
Query 325630 AAGTTCCTTGTCGATGAA 325647
| || |||||||||||
Sbjct 137528 CAACTCTTTGTCGATGAA 137511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179592068536072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |