Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq111 96.9 8e-15 >seq111 Length=593702 Score = 96.9 bits (106), Expect = 8e-15 Identities = 225/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | || || || Sbjct 137842 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 137783 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | ||| ||||||||||||||| || ||| ||| || || | || | Sbjct 137782 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACAAAATTATGAGCCAAATTTATA 137723 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||| |||||||| || ||| || |||||| |||| Sbjct 137722 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 137663 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCA 297674 | ||| || || ||||| || |||| | |||||||||||| || | | | Sbjct 137662 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATGTGAACAAAA 137605 Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CG 297733 |||| ||||| ||| || || |||||||| | ||| || ||||| || || || | Sbjct 137604 CTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGTATGCTACGCTCGTTATCCA 137545 Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | || ||||||||| | || ||||||||||| Sbjct 137544 TGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 137511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102821725199400