Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq111 96.9 8e-15
>seq111
Length=593702
Score = 96.9 bits (106), Expect = 8e-15
Identities = 225/335 (67%), Gaps = 6/335 (2%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
|| ||||| |||| |||||| || ||| | || || | | || | || || ||
Sbjct 137842 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 137783
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| ||| | ||| ||||||||||||||| || ||| ||| || || | || |
Sbjct 137782 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACAAAATTATGAGCCAAATTTATA 137723
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616
||||| | |||| ||||||| |||||||| || ||| || |||||| ||||
Sbjct 137722 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 137663
Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAAAGCTGAATATATCA 297674
| ||| || || ||||| || |||| | |||||||||||| || | | |
Sbjct 137662 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACATGTGAACAAAA 137605
Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT-CG 297733
|||| ||||| ||| || || |||||||| | ||| || ||||| || || || |
Sbjct 137604 CTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGTATGCTACGCTCGTTATCCA 137545
Query 297734 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768
| || ||||||||| | || |||||||||||
Sbjct 137544 TGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 137511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102821725199400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |