Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq929 116 4e-21
seq3681 93.3 4e-14
seq3029 93.3 4e-14
seq1493 93.3 4e-14
seq1681 87.8 2e-12
seq3708 86.0 6e-12
seq2781 84.2 2e-11
seq2639 84.2 2e-11
seq2423 84.2 2e-11
>seq929
Length=70851
Score = 116 bits (128), Expect = 4e-21
Identities = 178/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223
||| ||||||| |||| || | |||||| |||||| | ||||| || || ||||||
Sbjct 56640 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 56699
Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283
||||| ||||| | || |||| ||| || || | | |||| | ||| || ||
Sbjct 56700 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 56759
Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343
| |||||||||| ||||||||| ||||||||| ||||| || | |||||| ||||
Sbjct 56760 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 56819
Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403
| || || |||| | | |||| || ||| |||| ||| || | | |||||||
Sbjct 56820 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 56879
Query 154404 TCGGCGAGCCCTTG 154417
|| || | |||||
Sbjct 56880 TCCGCCAATCCTTG 56893
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685
||||| |||||||||| ||||| || ||| || || ||||| |||| |||||||
Sbjct 57251 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 57310
Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745
||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| |
Sbjct 57311 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 57370
Query 154746 TCAATAATTG 154755
||||||||||
Sbjct 57371 TCAATAATTG 57380
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873
|||||| | |||||||||||| | ||| |||| ||| || ||||| | ||
Sbjct 57499 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 57558
Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933
||||||| |||||| | ||| || | ||| ||||| || | ||| || | |||
Sbjct 57559 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 57618
Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993
| || || |||||||| || || || ||||| |||| || ||| ||| |
Sbjct 57619 GAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 57677
Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047
||| ||||||| ||||||| |||||||| || || ||||| || || | ||| ||
Sbjct 57678 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 57732
>seq3681
Length=661693
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| |||||
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || ||||||||||| || || ||||||||
Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 19269 GTCTTAACAAAAATTTGCATT 19249
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| | || || || || || ||||||||||| || || ||||||||
Sbjct 10461 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 10402
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||||| || | || ||||||||
Sbjct 10401 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 10342
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 10341 AAGAGTCTTAACAAAAATTTGCATT 10317
>seq3029
Length=236
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || ||||||||||| || || ||||||||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||||| || | || |||||||| | |
Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
>seq1493
Length=366
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
|| || || || || || |||||||||||||| ||||| ||||| |||||| |||
Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| ||||||| | || ||||||| || | ||| |||||||| | ||| || ||||||
Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247
Query 64436 ATTTGCATT 64444
|||||||||
Sbjct 246 ATTTGCATT 238
>seq1681
Length=34527
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| ||||| || ||
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| |||| | || || || || || ||||||||||| || || ||||||||
Sbjct 30127 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 30068
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||||| || | || ||||||||
Sbjct 30067 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 30008
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 30007 AAGAGTCTTAACAAAAATTTGCATT 29983
>seq3708
Length=1771
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || || |||| | || ||||| || || ||||||||||| || || ||||||||
Sbjct 1351 CTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 1410
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||||| || | || ||||||||
Sbjct 1411 CCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGT 1470
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 1471 AAGAGTCTTAACAAAAATTTGCATT 1495
>seq2781
Length=253
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|| |||||| || ||| |||| | || || || || || |||||||| ||||| |||||
Sbjct 189 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 130
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|||||| || ||| || | ||||||| | || ||||| | ||||| || ||
Sbjct 129 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 70
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || | || || |||||||||||||||
Sbjct 69 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 39
>seq2639
Length=264
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
|| || || || || || |||||||||||||| ||||| ||||| |||||| |||
Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| ||||||| | || ||||||| || | || |||||||| | || || ||||||
Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145
Query 64436 ATTTGCATT 64444
|||||||||
Sbjct 144 ATTTGCATT 136
>seq2423
Length=9717
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|| |||||| || ||| |||| | || || || || || |||||||| ||||| |||||
Sbjct 2317 AAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 2376
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|||||| || ||| || | ||||||| | || ||||| | ||||| || ||
Sbjct 2377 AATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 2436
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| || | || || |||||||||||||||
Sbjct 2437 TCCAGTAAGGGTCTTAACGAAAATTTGCATT 2467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499619043310560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |