Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1327 86.0 6e-12
>seq1327
Length=48099
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364
||| | || ||| ||||| | | |||||||| ||||| || | ||||| ||
Sbjct 21636 CTGTTCAACGCGATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGC 21577
Query 52365 TGGATCGA-GAGCGACAC-CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCG 52422
||||||| || || || ||||| || ||| || |||| || ||||| || |
Sbjct 21576 TGGATCGGTGACCGTCAGTCGCCATTTTG--CGAACGTTTGGTCGCGTTCGCAGCTGTTG 21519
Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482
| ||| | || |||||||||||||| || | || || | | |||| | ||| | |
Sbjct 21518 AAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGA 21459
Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525
||||||| ||||||||||||||||| |||| || || |||||
Sbjct 21458 TGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGA 21416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496236817673280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |