Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3708 111 1e-19 seq3681 109 4e-19 seq1681 109 4e-19 seq3029 104 2e-17 seq1493 102 6e-17 seq1996 100 2e-16 seq2639 93.3 3e-14 seq2781 89.7 4e-13 seq2423 89.7 4e-13 >seq3708 Length=1771 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || |||||| | |||||||| || || || ||||||||||||||| || Sbjct 1346 AATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 1405 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||||||| | ||||| ||||| |||||| |||||||| || ||||| Sbjct 1406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 1465 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 1466 CCGGTAAGAGTCTTAACAAAAATTTGCAT 1494 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||| | | ||||| | |||| ||| || || || |||||||||||| || || Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| ||||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747 Query 15147 ACCTGTCAGAGTTTTTACAAAAAT 15170 || || ||||| || |||||||| Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771 >seq3681 Length=661693 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| ||||| || ||||||||||||||| || ||||| Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||||||| | ||||| ||||| |||||| |||||||| || ||||| || || Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || |||||||||||||| Sbjct 10340 AGAGTCTTAACAAAAATTTGCAT 10318 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || |||||||||||| || || |||||||| | Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 10054 GTCTTAACAAAAATTTGCAT 10035 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||||||||| || ||||||| | Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 19269 GTCTTAACAAAAATTTGCAT 19250 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || ||||||||||||||| || ||||| | | Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| |||||| || || || || ||||| || || || Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || ||||||||||| Sbjct 18989 GTCTTAACGAAAATTTGCAT 18970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111 |||||||| || |||||| ||||| ||||| ||| |||||||||||| |||| || Sbjct 18461 CGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTTTTTACATTTTCAATT 18402 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 ||||| || || || | ||||| ||||| ||||||| ||||| ||||| || Sbjct 18401 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATC 18342 Query 15172 TGCAT 15176 ||||| Sbjct 18341 TGCAT 18337 >seq1681 Length=34527 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| ||||| || ||||||||||||||| || ||||| Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||||||| | ||||| ||||| |||||| |||||||| || ||||| || || Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || |||||||||||||| Sbjct 30006 AGAGTCTTAACAAAAATTTGCAT 29984 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || |||||||||||| || || ||| |||| | Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 29720 GTCTTAACAAAAATTTGCAT 29701 >seq3029 Length=236 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||||||||| || ||||||| | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| |||||||| || ||||| || || ||| Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 26 GTCTTAACAAAAATTTGCAT 7 >seq1493 Length=366 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTAT 15110 ||| ||||| || |||||||||||| || || |||||||| ||||||| | ||||| Sbjct 364 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 305 Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170 ||||| |||||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 304 TGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAAT 245 Query 15171 TTGCAT 15176 |||||| Sbjct 244 TTGCAT 239 >seq1996 Length=320 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| | |||||||| ||||| || ||||||||||||||| || Sbjct 178 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 237 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| ||||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 238 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 297 Query 15148 CCTGTCAGAGTTTTTACAAAAAT 15170 || || ||||| || |||||||| Sbjct 298 CCGGTAAGAGTCTTAACAAAAAT 320 >seq2639 Length=264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTAT 15110 ||| ||||| || |||||||||||| || || |||||||| ||||||| | ||||| Sbjct 262 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 203 Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170 ||||| |||||| |||||||| || ||||| || || || || || || ||||| Sbjct 202 TGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAAT 143 Query 15171 TTGCAT 15176 |||||| Sbjct 142 TTGCAT 137 >seq2781 Length=253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || ||||||||| || || || | Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCAT 40 >seq2423 Length=9717 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || ||||||||| || || || | Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| | ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCAT 2466 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || ||| || || | ||||||||||| || ||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || ||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCAT 3611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357374037031340