Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq3708 111 1e-19
seq3681 109 4e-19
seq1681 109 4e-19
seq3029 104 2e-17
seq1493 102 6e-17
seq1996 100 2e-16
seq2639 93.3 3e-14
seq2781 89.7 4e-13
seq2423 89.7 4e-13
>seq3708
Length=1771
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || |||||| | |||||||| || || || ||||||||||||||| ||
Sbjct 1346 AATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGT 1405
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||||||| | ||||| ||||| |||||| |||||||| || |||||
Sbjct 1406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 1465
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 1466 CCGGTAAGAGTCTTAACAAAAATTTGCAT 1494
Score = 93.3 bits (102), Expect = 3e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
||||| | | ||||| | |||| ||| || || || |||||||||||| || ||
Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||||| ||||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747
Query 15147 ACCTGTCAGAGTTTTTACAAAAAT 15170
|| || ||||| || ||||||||
Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771
>seq3681
Length=661693
Score = 109 bits (120), Expect = 4e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || ||||||||||||||| || |||||
Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||||||| | ||||| ||||| |||||| |||||||| || ||||| || ||
Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
||||| || ||||||||||||||
Sbjct 10340 AGAGTCTTAACAAAAATTTGCAT 10318
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || |||||||||||| || || |||||||| |
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 10054 GTCTTAACAAAAATTTGCAT 10035
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||||| |
Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 19269 GTCTTAACAAAAATTTGCAT 19250
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || ||||||||||||||| || ||||| | |
Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| |||||| || || || || ||||| || || ||
Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 18989 GTCTTAACGAAAATTTGCAT 18970
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| ||||| || ||||| ||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111
|||||||| || |||||| ||||| ||||| ||| |||||||||||| |||| ||
Sbjct 18461 CGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTTTTTACATTTTCAATT 18402
Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171
||||| || || || | ||||| ||||| ||||||| ||||| ||||| ||
Sbjct 18401 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATC 18342
Query 15172 TGCAT 15176
|||||
Sbjct 18341 TGCAT 18337
>seq1681
Length=34527
Score = 109 bits (120), Expect = 4e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || ||||||||||||||| || |||||
Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||||||| | ||||| ||||| |||||| |||||||| || ||||| || ||
Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
||||| || ||||||||||||||
Sbjct 30006 AGAGTCTTAACAAAAATTTGCAT 29984
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || |||||||||||| || || ||| |||| |
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 29720 GTCTTAACAAAAATTTGCAT 29701
>seq3029
Length=236
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||||| |
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| |||||||| || ||||| || || |||
Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 26 GTCTTAACAAAAATTTGCAT 7
>seq1493
Length=366
Score = 102 bits (112), Expect = 6e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTAT 15110
||| ||||| || |||||||||||| || || |||||||| ||||||| | |||||
Sbjct 364 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 305
Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170
||||| |||||| |||||||| |||||||| || || ||||| || || |||||
Sbjct 304 TGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAAT 245
Query 15171 TTGCAT 15176
||||||
Sbjct 244 TTGCAT 239
>seq1996
Length=320
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| | |||||||| ||||| || ||||||||||||||| ||
Sbjct 178 AATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 237
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||||| ||||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 238 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 297
Query 15148 CCTGTCAGAGTTTTTACAAAAAT 15170
|| || ||||| || ||||||||
Sbjct 298 CCGGTAAGAGTCTTAACAAAAAT 320
>seq2639
Length=264
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTAT 15110
||| ||||| || |||||||||||| || || |||||||| ||||||| | |||||
Sbjct 262 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 203
Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170
||||| |||||| |||||||| || ||||| || || || || || || |||||
Sbjct 202 TGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAAT 143
Query 15171 TTGCAT 15176
||||||
Sbjct 142 TTGCAT 137
>seq2781
Length=253
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || ||||||||| || || || |
Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCAT 40
>seq2423
Length=9717
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || ||||||||| || || || |
Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| | ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || |||||||||||
Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCAT 2466
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || ||| || || | ||||||||||| || |||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|||||||| ||||| || |||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCAT 3611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357374037031340
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