Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq266 102 7e-17
seq99 102 7e-17
seq3708 100 3e-16
seq3681 96.9 3e-15
seq1681 93.3 4e-14
seq1493 91.5 1e-13
seq2781 89.7 5e-13
seq2423 89.7 5e-13
seq2639 86.0 6e-12
seq3029 84.2 2e-11
>seq266
Length=548
Score = 102 bits (112), Expect = 7e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| ||| |
Sbjct 213 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 272
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 273 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 332
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 333 CAAAAATCTGCATTCCGCCAC 353
>seq99
Length=156819
Score = 102 bits (112), Expect = 7e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| ||| |
Sbjct 40122 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 40181
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 40182 TTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 40241
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 40242 CAAAAATCTGCATACCGCCAC 40262
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || || ||||||||||| |||||||||||||| ||| |
Sbjct 39836 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTTTTTACAT 39895
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 39896 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 39955
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 39956 CAAAAATCTGCATTCCGCCAC 39976
>seq3708
Length=1771
Score = 100 bits (110), Expect = 3e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||||| || || ||| | ||||| |||||||| ||||| ||||| ||||| ||||| ||
Sbjct 1345 CAATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 1404
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||||| ||| | |||| || || || | || ||||| | || | ||||||
Sbjct 1405 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 1464
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| ||||| || ||||||||||||||
Sbjct 1465 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 1494
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
|||| | | || || | |||| |||||||| || || ||||| |||||||||||||||
Sbjct 1629 AATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 1688
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||| | |||| || || || | || ||||| | || | |||||||
Sbjct 1689 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 1748
Query 45312 CCGGTTAGAGTTTTTACAAAAAT 45334
||||| ||||| || ||||||||
Sbjct 1749 CCGGTAAGAGTCTTAACAAAAAT 1771
>seq3681
Length=661693
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| |||||||||||||||||||| ||| |
Sbjct 10165 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTC 10106
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 10105 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 10046
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 10045 AAAATTTGCAT 10035
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || ||||| ||||| ||||| ||||| || ||||| ||| |
Sbjct 10448 ATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTTACATTC 10389
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 10388 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 10329
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 10328 AAAATTTGCAT 10318
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| ||||| ||||| || ||||| ||| |
Sbjct 19380 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTC 19321
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 19320 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 19261
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 19260 AAAATTTGCAT 19250
>seq1681
Length=34527
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| ||||||||||||||||| || ||| |
Sbjct 29831 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCTTTTACATTC 29772
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 29771 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 29712
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 29711 AAAATTTGCAT 29701
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || ||||| ||||| ||||| ||||| || ||||| ||| |
Sbjct 30114 ATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTTACATTC 30055
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 30054 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 29995
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 29994 AAAATTTGCAT 29984
>seq1493
Length=366
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275
||||| || ||||| ||||| |||||||||||||||||||| ||| | ||||
Sbjct 363 CGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATT 304
Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335
|| || || | || ||||| | || | ||||||||||||||||| || || ||||||
Sbjct 303 GTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATT 244
Query 45336 TGCAT 45340
|||||
Sbjct 243 TGCAT 239
>seq2781
Length=253
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
|| || || || || | ||||| ||||| || ||||| ||||| || ||||||||||||
Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|||||| ||| | ||||| || || || | || ||||| | ||| | |||||
Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || |||||||||||
Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCAT 40
>seq2423
Length=9717
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
|| || || || || | ||||| ||||| || ||||| ||||| || ||||||||||||
Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|||||| ||| | ||||| || || || | || ||||| | ||| | |||||
Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || |||||||||||
Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCAT 2466
>seq2639
Length=264
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275
||||| || ||||| ||||| |||||||||||||||||||| ||| | ||||
Sbjct 261 CGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATT 202
Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335
|| || || | || ||||| | || | |||||||||||| || || || || ||||||
Sbjct 201 GTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATT 142
Query 45336 TGCAT 45340
|||||
Sbjct 141 TGCAT 137
>seq3029
Length=236
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| |||||||| || || ||||| ||||| ||||| || ||||| ||| |
Sbjct 137 ATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTC 78
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | || | |||||||||||| ||||| || |||
Sbjct 77 TCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 18
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 17 AAAATTTGCAT 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451979899235040
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