Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq2376 87.8 1e-12
seq266 87.8 1e-12
seq99 82.4 5e-11
>seq2376
Length=286
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || ||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct 85 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 142
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 143 ATAACGTACGACCATCTTCCAGTTGTTTCCC 173
>seq266
Length=548
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/91 (82%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||||||||||||||| || ||||| || ||||
Sbjct 347 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 404
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 405 ATAACGTACGACCATCTTCCAGTTGTTTCCC 435
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||
Sbjct 61 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 118
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 119 ATAACGTACGACCATCTTCCAGTTGTTTCCC 149
>seq99
Length=156819
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || |||||||| ||||||||||| ||||||||||| || ||||| || ||||
Sbjct 39970 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 40027
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581
| |||| || |||| |||| |||||||||
Sbjct 40028 ATAACGTACGACCATCTTCCAGTTGTTTCCC 40058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347352140769692
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |