Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2376 87.8 1e-12 seq266 87.8 1e-12 seq99 82.4 5e-11 >seq2376 Length=286 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || ||||| |||||||||||||||||||||||||| || ||||| || |||| Sbjct 85 CCGCCACGTAAACGGAGTACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 142 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 143 ATAACGTACGACCATCTTCCAGTTGTTTCCC 173 >seq266 Length=548 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||||||||||||||| || ||||| || |||| Sbjct 347 CCGCCACGTAAACGCAGCACCAAATGCAAAGTGCTTTCTTTCTGGATATTGTAGTCGG-- 404 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 405 ATAACGTACGACCATCTTCCAGTTGTTTCCC 435 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||| ||||||||||| || ||||| || |||| Sbjct 61 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 118 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 119 ATAACGTACGACCATCTTCCAGTTGTTTCCC 149 >seq99 Length=156819 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || |||||||| ||||||||||| ||||||||||| || ||||| || |||| Sbjct 39970 CCGCCACGTAAACGCAGCACCAAATGCAATGTGCTTTCTTTCTGGATATTGTAGTCGG-- 40027 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCC 39581 | |||| || |||| |||| ||||||||| Sbjct 40028 ATAACGTACGACCATCTTCCAGTTGTTTCCC 40058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347352140769692