Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1327 183 3e-41 >seq1327 Length=48099 Score = 183 bits (202), Expect = 3e-41 Identities = 270/377 (72%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| | Sbjct 21411 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 21470 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| ||||| |||||||| | ||| || || || |||| Sbjct 21471 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 21530 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089 | || |||| || |||| || |||| | || || |||||||||||| ||| Sbjct 21531 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 21586 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || || || |||| || |||||||| || || ||||| ||||| |||| | | | | Sbjct 21587 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGA--AAATCAC 21644 Query 133150 TCTTCCGAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTGTA 133204 || | ||| ||| | |||||||||||| |||| | |||||||| || || | Sbjct 21645 GCTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATGGA 21701 Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264 | || || ||||| ||||| ||||| || || | || |||||| || || | ||||| Sbjct 21702 CATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTT 21761 Query 133265 GAGCGAAACGCTCGACC 133281 | | || ||||| ||| Sbjct 21762 GCGAAAATCGCTCCACC 21778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500147016092160