Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3725 331 7e-85
seq529 141 7e-28
seq1140 111 1e-18
>seq3725
Length=229766
Score = 331 bits (366), Expect = 7e-85
Identities = 494/701 (70%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 192414 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 192355
Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 192354 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 192295
Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 192294 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 192235
Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 192234 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 192175
Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 192174 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 192115
Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
| ||| || | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 192114 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 192055
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432
||| |||||| | | || ||| || || || ||| |||| || | |||||
Sbjct 192054 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 191995
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
||| | || |||| ||| |||||||| | ||||||||| || || || ||||
Sbjct 191994 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 191935
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
||| | ||| || | ||| || |||||||||| ||||| ||||| | ||
Sbjct 191934 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCGA 191875
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||||| ||| || |||||||||||||| |||| || || || || | |||||| ||
Sbjct 191874 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 191815
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 191814 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 191755
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
| |||||||| | || || || |||||||| |||||||||
Sbjct 191754 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 191714
Score = 109 bits (120), Expect = 4e-18
Identities = 195/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 192883 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 192824
Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 192823 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 192765
Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 192764 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 192705
Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842
||| | | | | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 192704 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 192645
Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884
| | ||||||| |||||| | | ||||| ||||||
Sbjct 192644 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 192603
>seq529
Length=107346
Score = 141 bits (156), Expect = 7e-28
Identities = 344/512 (67%), Gaps = 18/512 (4%)
Strand=Plus/Minus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 46424 GGTTCGTTGATGATTCGTACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 46365
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||||| |||||| ||||| || ||||| || | ||||||| | ||||||||
Sbjct 46364 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 46305
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 46304 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 46245
Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| | | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 46244 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 46189
Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 46188 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 46129
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555
|||| ||| | | || |||||||| || | ||||| ||||| | | || | |
Sbjct 46128 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 46070
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 46069 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 46010
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || | ||||| || |||||||| |||||||||||||| |||||| | | || |
Sbjct 46009 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 45950
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATA 518704
| || ||||||| || ||| || ||||||
Sbjct 45949 CAAC---ACTAAAAATTATTC--AATTCAATA 45923
>seq1140
Length=61622
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Minus
Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 25931 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 25872
Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 25871 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 25812
Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 25811 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 25768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780617753535544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |