Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3725 331 7e-85 seq529 141 7e-28 seq1140 111 1e-18 >seq3725 Length=229766 Score = 331 bits (366), Expect = 7e-85 Identities = 494/701 (70%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 192414 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 192355 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 192354 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 192295 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 192294 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 192235 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 192234 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 192175 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 192174 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 192115 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 192114 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 192055 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 192054 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 191995 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 ||| | || |||| ||| |||||||| | ||||||||| || || || |||| Sbjct 191994 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 191935 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | || Sbjct 191934 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCGA 191875 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 191874 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 191815 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 191814 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 191755 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 191754 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 191714 Score = 109 bits (120), Expect = 4e-18 Identities = 195/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 192883 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 192824 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 192823 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 192765 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 192764 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 192705 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 192704 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 192645 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | ||||| |||||| Sbjct 192644 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 192603 >seq529 Length=107346 Score = 141 bits (156), Expect = 7e-28 Identities = 344/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 46424 GGTTCGTTGATGATTCGTACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 46365 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| || ||||| || | ||||||| | |||||||| Sbjct 46364 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 46305 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 46304 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 46245 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 46244 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 46189 Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 46188 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 46129 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555 |||| ||| | | || |||||||| || | ||||| ||||| | | || | | Sbjct 46128 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 46070 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 46069 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 46010 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 46009 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 45950 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 | || ||||||| || ||| || |||||| Sbjct 45949 CAAC---ACTAAAAATTATTC--AATTCAATA 45923 >seq1140 Length=61622 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 25931 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 25872 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 |||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 25871 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 25812 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 25811 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 25768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780617753535544