Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3725 246 4e-60 seq529 134 2e-26 >seq3725 Length=229766 Score = 246 bits (272), Expect = 4e-60 Identities = 547/814 (67%), Gaps = 10/814 (1%) Strand=Plus/Minus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| ||||| || || ||||| || || || || ||||| | || || || ||| Sbjct 192520 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 192461 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | | Sbjct 192460 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTG 192401 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||||||||| || || || || ||||| | ||||| ||||| || || Sbjct 192400 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 192341 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 |||| ||| | || | || |||||||| ||||||||||| |||||||| || || || Sbjct 192340 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 192281 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 192280 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 192222 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 192221 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 192163 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || || ||| | || | || || | Sbjct 192162 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 192103 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | ||| || | || ||||| || | ||||| | || ||||| | | Sbjct 192102 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCTGGTG 192043 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| |||| || || || | || |||| ||| | ||||| || || || Sbjct 192042 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 191986 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||||| || | | ||||| ||||||||| || ||| || ||| | Sbjct 191985 TGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 191926 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| |||||||||||||| || | || |||| || ||| || | Sbjct 191925 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCGACTTGATTTT 191866 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | ||||| || || || || ||||| || || || || || || || ||| || | Sbjct 191865 TTGCCGCATCTCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 191809 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | ||||||||||| ||||| ||||||||||| || | | || | ||||| || | Sbjct 191808 TACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGCCAACAC 191749 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | ||||| || || |||||||| || || || Sbjct 191748 AACTGTACGTAGTACCCAAATCAATTCCAATAGC 191715 Score = 116 bits (128), Expect = 5e-21 Identities = 194/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || || ||||| || || |||| || |||||||| || |||||| Sbjct 192877 GCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 192818 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || || || || |||||||| | | Sbjct 192817 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACAACT 192758 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 192757 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 192701 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | || || || || || || | ||||| | || Sbjct 192700 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGTG 192641 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||||||| Sbjct 192640 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 192602 >seq529 Length=107346 Score = 134 bits (148), Expect = 2e-26 Identities = 309/462 (67%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || || | | || || |||||||| || | |||||||| || ||| Sbjct 46424 GGTTCGTTGATGATTCGTACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 46365 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || ||||| | |||||| || || || || ||||| ||||| || | | |||| || Sbjct 46364 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 46305 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || | ||| | || || || ||||||||||| | |||||||| |||||| ||||| Sbjct 46304 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 46245 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||| |||| |||||||||||| | || | || | ||||| || Sbjct 46244 GGAGTGAACAATTTCTTTTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCTCGATTTT 46185 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929 | | ||| | | | ||| ||| ||| |||| | || || ||||| | Sbjct 46184 TC---AACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 46129 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | || |||| | |||||||||||| || || || || | || || ||| || Sbjct 46128 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAACTG 46069 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 || ||||| ||||| ||||| ||||| || | |||||| || || ||||| || Sbjct 46068 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 46009 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| ||||||| || || || || ||||||||||| || || Sbjct 46008 GGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACG 45967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635100058904160