Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3681 109 1e-18 seq2423 109 1e-18 seq99 87.8 4e-12 >seq3681 Length=661693 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || ||||| || ||||| || || ||||||||||||||||||||||| | Sbjct 18481 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 18422 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || || || ||||| || || || || |||||||| |||| ||| ||||||| Sbjct 18421 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 18362 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| Sbjct 18361 TCAACGTTTTCACAAATATCTGCAT 18337 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || || ||||| || ||||| ||||| |||||||| ||||||||||| Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || ||||| || || || || ||| ||||| | ||| | ||| || || || | Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || || || | ||||||| Sbjct 10056 GAGTCTTAACAAAAATTTGCATT 10034 >seq2423 Length=9717 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || ||||| || ||||| ||||| || |||||||||||||||||||| | Sbjct 3135 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 3194 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || || || ||||| || || || || |||||||| |||| ||| ||||||| Sbjct 3195 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 3254 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| Sbjct 3255 TCAACGTTTTCACAAATATCTGCAT 3279 >seq99 Length=156819 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| ||||| || || | || ||||| || Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109422976379108