Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 109 1e-18
seq2423 109 1e-18
seq99 87.8 4e-12
>seq3681
Length=661693
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| || || ||||||||||||||||||||||| |
Sbjct 18481 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 18422
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 18421 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 18362
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 18361 TCAACGTTTTCACAAATATCTGCAT 18337
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || || || || ||||| || ||||| ||||| |||||||| |||||||||||
Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || || || ||| ||||| | ||| | ||| || || || |
Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||| || || || | |||||||
Sbjct 10056 GAGTCTTAACAAAAATTTGCATT 10034
>seq2423
Length=9717
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| ||||| || |||||||||||||||||||| |
Sbjct 3135 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 3194
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 3195 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 3254
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 3255 TCAACGTTTTCACAAATATCTGCAT 3279
>seq99
Length=156819
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| ||||| | || ||| || || |||||||||||||| || || ||||||||
Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || |||||||| || ||| ||||| || || | || ||||| ||
Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109422976379108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |