Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3725 302 4e-76 seq529 131 1e-24 seq3681 116 3e-20 seq1681 113 4e-19 seq2781 109 4e-18 seq2423 109 4e-18 seq3708 105 5e-17 seq3029 104 2e-16 seq3902 100 2e-15 seq2639 100 2e-15 seq1493 100 2e-15 seq3658 93.3 3e-13 seq99 91.5 1e-12 seq2435 86.0 5e-11 >seq3725 Length=229766 Score = 302 bits (334), Expect = 4e-76 Identities = 398/548 (73%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 191715 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 191774 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| |||||||| || | || || ||| ||||||| ||||||| Sbjct 191775 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 191834 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||| ||||| |||||| |||||| | | |||||| ||| Sbjct 191835 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTCGCGTTGAATCCTCATAAT 191894 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | | || ||| | Sbjct 191895 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 191954 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 |||||||| |||||||| ||| ||||| | || | |||| |||||| | ||| || Sbjct 191955 GATATGAAACATTGGCCATTCAAAATTATCAACG---ATGGATCGAAACCTAAAATTCAA 192011 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||||||| |||| ||||||| || Sbjct 192012 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTT 192070 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| |||||| ||||| Sbjct 192071 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 192130 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 192131 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 192190 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 192191 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 192250 Query 550528 ACTTGATA 550535 |||||||| Sbjct 192251 ACTTGATA 192258 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || |||||||| ||||| || || ||||||||||||||||| || ||||||||| Sbjct 193293 GGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAAGTTACTTTTGACATCGATGCC 193352 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 || || |||||||| || |||| Sbjct 193353 AACGGCATTTTGAACGTTTCTGC 193375 >seq529 Length=107346 Score = 131 bits (144), Expect = 1e-24 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | | Sbjct 46243 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATTTG 46302 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | |||| || | || || ||||| ||||| || || |||||||| Sbjct 46303 GGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAACGT 46362 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| ||||||||| | || || ||||| ||| Sbjct 46363 CAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTACGAATCATCAACGAA 46422 Query 550502 CC 550503 || Sbjct 46423 CC 46424 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 ||||| |||||| |||| ||||| ||| || | | || ||||| ||| ||| ||||| Sbjct 47386 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGG 47445 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | || || | || || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 47446 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 47505 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| | || || |||||| | || || || Sbjct 47506 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 47543 >seq3681 Length=661693 Score = 116 bits (128), Expect = 3e-20 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 10056 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 10055 AGTCTTAACAAAAATTTGCAT 10035 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 19271 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 19270 AGTCTTAACAAAAATTTGCAT 19250 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || ||| ||| | ||| | ||||| |||||||| Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGTAAG 18991 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||||||||||||||| Sbjct 18990 GGTCTTAACGAAAATTTGCAT 18970 Score = 96.9 bits (106), Expect = 3e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 |||| || || |||||||| | | ||| ||||| || ||||||||||| ||||| || Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTT 563444 ||||| |||||| ||| |||||||||| || ||| ||| | || | ||||| Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTT 10348 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| ||||| ||||||||||| Sbjct 10347 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 10318 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | || ||||| ||||||||||| || ||||||||||| || | Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| || | || ||| | || | ||||| ||||| || Sbjct 19612 TTCACATTCTCAACAGTATCAG-ATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAG 19554 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 19553 GGTCTTAACAAAAATTTGCAT 19533 >seq1681 Length=34527 Score = 113 bits (124), Expect = 4e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||||||||||||||| || | Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 29722 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 29721 AGTCTTAACAAAAATTTGCAT 29701 Score = 96.9 bits (106), Expect = 3e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 |||| || || |||||||| | | ||| ||||| || ||||||||||| ||||| || Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTT 563444 ||||| |||||| ||| |||||||||| || ||| ||| | || | ||||| Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTT 30014 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| ||||| ||||||||||| Sbjct 30013 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 29984 >seq2781 Length=253 Score = 109 bits (120), Expect = 4e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 67 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 66 AGTAAGGGTCTTAACGAAAATTTGCAT 40 >seq2423 Length=9717 Score = 109 bits (120), Expect = 4e-18 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 ||| ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 2439 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 2440 AGTAAGGGTCTTAACGAAAATTTGCAT 2466 >seq3708 Length=1771 Score = 105 bits (116), Expect = 5e-17 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 1756 Query 563454 AGTTTTAACGAAAAT 563468 ||| ||||| ||||| Sbjct 1757 AGTCTTAACAAAAAT 1771 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || ||||| | | ||||||||| || ||||||||||| ||||| || ||||| Sbjct 1352 TTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 1411 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 1412 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGT 1470 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| ||||||||||| Sbjct 1471 AAGAGTCTTAACAAAAATTTGCAT 1494 >seq3029 Length=236 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAG 28 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||| ||||||||||| Sbjct 27 AGTCTTAACAAAAATTTGCAT 7 >seq3902 Length=193247 Score = 100 bits (110), Expect = 2e-15 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || |||||||| |||||||| || || | || |||||||||||||||| Sbjct 176009 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 175950 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| ||||| || ||| ||||||||| | ||| ||| | ||| | | | Sbjct 175949 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATT-GCAGAAGCATACGATG 175891 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 175890 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 175847 >seq2639 Length=264 Score = 100 bits (110), Expect = 2e-15 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||| ||||| || |||||||||||||||||||||||||| |||||| ||| ||||| Sbjct 259 TTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGT 200 Query 563412 ATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| || ||| ||| | || | ||||| || ||||| || ||||||||||||| Sbjct 199 ATCAGATGGTTCTAC-TTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTT 141 Query 563471 GCAT 563474 |||| Sbjct 140 GCAT 137 >seq1493 Length=366 Score = 100 bits (110), Expect = 2e-15 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||| ||||| || |||||||||||||||||||||||||| |||||| ||| ||||| Sbjct 361 TTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGT 302 Query 563412 ATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| || ||| ||| | || | ||||| || || ||||| ||||||||||||| Sbjct 301 ATCAGATGGTTCTAC-TTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTT 243 Query 563471 GCAT 563474 |||| Sbjct 242 GCAT 239 Score = 89.7 bits (98), Expect = 4e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || |||||||||||||||||||||||||| | Sbjct 95 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 36 Query 563395 TTTACTGCCTCAATTGTATCAG 563416 ||||| ||| |||||||||| Sbjct 35 TTTACATTCTCTATTGTATCAG 14 >seq3658 Length=248153 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 168984 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTC 168925 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 168924 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 168865 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 168864 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 168805 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| ||||||| Sbjct 168804 CAAAATTACAAAGAAGTCATTGATCC 168779 >seq99 Length=156819 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || || || || || || || || ||| || || | |||||| |||| Sbjct 40854 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 40911 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| || |||||| Sbjct 40912 TAAGTGTCTTCACGAATATCTGCATA 40937 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| | Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||||| ||||||| || ||| ||| | || | ||||| ||||| | Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 39947 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| ||||| Sbjct 39948 TGTTTTCACAAAAATCTGCAT 39968 >seq2435 Length=348479 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 85471 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 85530 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || | |||| | |||| | ||| Sbjct 85531 AATGGTATAGTTCATGTCAGTGCTCGAGAT 85560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029077904280760