Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 105 5e-18
seq3614 98.7 8e-16
seq2423 96.9 3e-15
>seq3681
Length=661693
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||||| |||| ||| || ||||| |||||
Sbjct 18481 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 18422
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 18421 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 18362
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 18361 TCAACGTTTTCACAAATATCTGCATC 18336
>seq3614
Length=257007
Score = 98.7 bits (108), Expect = 8e-16
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| |||||||||||| ||||||||| | || || |||||| ||| ||| |||
Sbjct 80884 GATTCGTTCACAAATTAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 80825
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| |||| | || || ||
Sbjct 80824 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 80765
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | ||||||| |||||| | || | ||||| || || || || ||||| |||||
Sbjct 80764 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 80705
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 80704 GCCGACAGG 80696
>seq2423
Length=9717
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||
Sbjct 3135 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 3194
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 3195 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 3254
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 3255 TCAACGTTTTCACAAATATCTGCATC 3280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380918453600052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |