Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3681 105 5e-18 seq3614 98.7 8e-16 seq2423 96.9 3e-15 >seq3681 Length=661693 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||||| |||| ||| || ||||| ||||| Sbjct 18481 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCT 18422 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 18421 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 18362 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 18361 TCAACGTTTTCACAAATATCTGCATC 18336 >seq3614 Length=257007 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||||| ||||||||| | || || |||||| ||| ||| ||| Sbjct 80884 GATTCGTTCACAAATTAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 80825 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| |||| | || || || Sbjct 80824 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 80765 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 80764 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCA 80705 Query 9255 TCCCACCGG 9263 || || || Sbjct 80704 GCCGACAGG 80696 >seq2423 Length=9717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681 || |||| ||||| || || ||||||||||| | || | ||| || ||||| ||||| Sbjct 3135 GCATACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCT 3194 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||||||| | | | ||||||| ||| || || | |||||||||||||| | Sbjct 3195 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 3254 Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| ||||||||| Sbjct 3255 TCAACGTTTTCACAAATATCTGCATC 3280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380918453600052