Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3725 333 2e-85 seq529 118 7e-21 seq1681 116 2e-20 seq2781 113 3e-19 seq2423 113 3e-19 seq3681 111 1e-18 seq3708 105 4e-17 seq1996 105 4e-17 seq3029 104 2e-16 seq1493 100 2e-15 seq3658 96.9 2e-14 seq2639 95.1 8e-14 seq3902 93.3 3e-13 seq2435 91.5 1e-12 >seq3725 Length=229766 Score = 333 bits (368), Expect = 2e-85 Identities = 443/611 (73%), Gaps = 11/611 (2%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 191703 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTC 191762 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| |||||||| || ||||| ||| | || || ||| ||| Sbjct 191763 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 191822 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || |||| || ||||||||||| || ||| |||||| || | Sbjct 191823 GTTGCTTTCACCGATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTCGCGTTG 191882 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| ||||||||| | Sbjct 191883 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 191942 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 | || || ||||||||| |||||||| || || | || || | ||| ||||| Sbjct 191943 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAATTATCAACGATGGATCGAAACCT 192002 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| ||| || | || |||| |||| ||| |||| | Sbjct 192003 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTG 192060 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732 | ||||| |||| || ||||| |||| || |||| ||| | ||| || || | Sbjct 192061 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 192118 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 192119 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 192178 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || || Sbjct 192179 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 192238 Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909 | |||||||||| ||||||| || || | ||| ||||||| | || ||||| Sbjct 192239 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 192298 Query 474910 TTGTGGAGGTA 474920 | |||| |||| Sbjct 192299 TGGTGGTGGTA 192309 >seq529 Length=107346 Score = 118 bits (130), Expect = 7e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 ||||||| ||| || | || ||| ||||||| | |||||||| ||||||||| Sbjct 46222 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 46281 Query 474698 CAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGC 474756 ||| || ||| | ||| | || ||||||| | |||| || | || |||||||| Sbjct 46282 GAAATTGCCGAGG-CTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGC 46340 Query 474757 ATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAA 474816 ||||| || ||| | ||||||||||| || |||||||| || | ||||| |||||||| Sbjct 46341 TTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA 46400 Query 474817 TGTTTTACGTATTATTAATGAACC 474840 |||| |||| || || || ||||| Sbjct 46401 TGTTGTACGAATCATCAACGAACC 46424 Score = 89.7 bits (98), Expect = 3e-12 Identities = 241/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || |||||||| || || || ||||| ||||| || | || | || ||| || Sbjct 47170 AATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGTGAA 47229 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||| ||| | || |||| || | ||||| | ||| | | || || || Sbjct 47230 ---GA--AGATACTGG-TGATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGAATT 47283 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| || || || | ||||| || || ||| ||| ||||| | || ||| Sbjct 47284 GAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACCAAG 47343 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 ||||| | |||| ||| | | || ||||| | || || || || ||| | || Sbjct 47344 AAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTTTTC 47403 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||| ||| || | | || ||||| ||| | ||||| | || |||| || Sbjct 47404 GAAGGCGAACGACCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGACCGGC 47463 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||| ||||| | || || || |||||||||||||| || ||||| || | || Sbjct 47464 ATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGTGAAC 47523 Query 476153 GGTATT 476158 || ||| Sbjct 47524 GGCATT 47529 >seq1681 Length=34527 Score = 116 bits (128), Expect = 2e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || ||||||||||| | Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||||| | || ||||| ||||| || Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 29722 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 29721 AGTCTTAACAAAAATTTG 29704 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 |||| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 || || ||| ||| || || ||||||| || ||| | ||| || ||||| Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 30013 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||||||||| |||||||| Sbjct 30012 CCGGTAAGAGTCTTAACAAAAATTTG 29987 >seq2781 Length=253 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||| ||| ||| || ||||||| || | | || ||| | || | ||||| || Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCC 67 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 66 AGTAAGGGTCTTAACGAAAATTTG 43 >seq2423 Length=9717 Score = 113 bits (124), Expect = 3e-19 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||| ||| ||| || ||||||| || | | || ||| || || ||||| || Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 2439 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 2440 AGTAAGGGTCTTAACGAAAATTTG 2463 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 3465 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 3524 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| |||||| || |||| | || ||| || ||||| ||||| || Sbjct 3525 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 3584 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || Sbjct 3585 AGTCAGAGTTTTGACAAATATCTG 3608 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 3260 GTTTTCACAAATATCTG 3276 >seq3681 Length=661693 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||||| | || ||||| ||||| || Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 10056 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 10055 AGTCTTAACAAAAATTTG 10038 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 |||| ||| ||||||||||| | |||||||||||| || |||||||||||||| || || Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 || || ||| ||| || || ||||||| || ||| | ||| || ||||| Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 10347 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||||||||| |||||||| Sbjct 10346 CCGGTAAGAGTCTTAACAAAAATTTG 10321 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| | Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || ||||| || || || Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTTTTCCCAGTTAG 19554 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 19553 GGTCTTAACAAAAATTTG 19536 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||||||||| || |||||||||||||| || || || || | Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| | || | ||||| || || || Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATT-GTTTTTCCAGTAAG 18991 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||||||||||| Sbjct 18990 GGTCTTAACGAAAATTTG 18973 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||||| | || ||||| ||||| || Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 19271 Query 480752 AGTCTTAACGAAAATTTG 480769 ||||||||| |||||||| Sbjct 19270 AGTCTTAACAAAAATTTG 19253 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || ||||| ||||| |||||||||||||| | Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 18356 GTTTTCACAAATATCTG 18340 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| |||||||||||||| || |||||||| || || || ||||| Sbjct 18151 TTACTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 18092 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||| |||||| || |||| | || ||| || ||||| ||||| || Sbjct 18091 TTTACCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 18032 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || Sbjct 18031 AGTCAGAGTTTTCACAAATATCTG 18008 >seq3708 Length=1771 Score = 105 bits (116), Expect = 4e-17 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || | Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| ||| || ||||| ||||| || Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGCCGGTAAG 1756 Query 480752 AGTCTTAACGAAAAT 480766 ||||||||| ||||| Sbjct 1757 AGTCTTAACAAAAAT 1771 Score = 98.7 bits (108), Expect = 6e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||| ||||| | |||||| ||||| || |||||||||||||| || || || Sbjct 1348 TTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 1407 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| || || ||||||| || ||| | ||| || ||||| || Sbjct 1408 TTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 1467 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||||||||| |||||||| Sbjct 1468 GGTAAGAGTCTTAACAAAAATTTG 1491 >seq1996 Length=320 Score = 105 bits (116), Expect = 4e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| ||||||||||| | |||||||||||| || |||||||||||||| || || || Sbjct 180 TTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 239 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 || ||| ||| || || ||||||| || | | || ||| ||| || ||||| | Sbjct 240 TTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAA-GGTGATCGTTTTGC 298 Query 480745 CGGTGAGAGTCTTAACGAAAAT 480766 |||| ||||||||||| ||||| Sbjct 299 CGGTAAGAGTCTTAACAAAAAT 320 >seq3029 Length=236 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| || ||| | ||| || ||||| ||||| ||| Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27 Query 480753 GTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 26 GTCTTAACAAAAATTTG 10 >seq1493 Length=366 Score = 100 bits (110), Expect = 2e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 480645 AGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCA 480704 |||||||||||||| || ||||||||||| || |||||||| || ||| ||| || Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307 Query 480705 ATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAA 480764 || ||||||| || ||| | ||| || ||||| ||||| ||||||||||||||| Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247 Query 480765 ATTTG 480769 ||||| Sbjct 246 ATTTG 242 >seq3658 Length=248153 Score = 96.9 bits (106), Expect = 2e-14 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| |||| ||||| |||||||| | || || ||| ||||||| Sbjct 168977 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCAAGTTTCATGGAAT 168918 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | | |||| ||| Sbjct 168917 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 168859 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 168858 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 168799 Query 296254 TATAAAGAGATTATTGATCC 296273 || ||||| | |||||||| Sbjct 168798 TACAAAGAAGTCATTGATCC 168779 >seq2639 Length=264 Score = 95.1 bits (104), Expect = 8e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 480645 AGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCA 480704 |||||||||||||| || ||||||||||| || |||||||| || ||| ||| || Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205 Query 480705 ATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAA 480764 || ||||||| || ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145 Query 480765 ATTTG 480769 ||||| Sbjct 144 ATTTG 140 >seq3902 Length=193247 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || || |||||||||||| || | || |||||||||||||||||| || Sbjct 176002 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 175943 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||| ||||| || ||| ||||||||| | || | || || | |||| Sbjct 175942 AAAAGCCCTGACGCAGAAAGCAAGTTTAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 175883 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| | | || |||||| |||| ||||||||||| |||||||| Sbjct 175882 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 175839 >seq2435 Length=348479 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 85471 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 85530 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 85531 AATGGTATAGTTCATGTCAGTGCTCGAGAT 85560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268002301630352