Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3725 306 5e-78 seq3681 140 4e-28 seq2423 134 2e-26 seq1681 134 2e-26 seq99 129 8e-25 seq3029 125 9e-24 seq266 125 9e-24 seq3708 120 4e-22 seq529 120 4e-22 seq2781 118 1e-21 seq1996 107 3e-18 seq2639 105 9e-18 seq3780 100 4e-16 seq1493 96.9 5e-15 >seq3725 Length=229766 Score = 306 bits (338), Expect = 5e-78 Identities = 485/692 (70%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 191715 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 191774 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 191775 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 191834 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||||||||| ||||||||||| || |||| ||| ||| Sbjct 191835 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTCGCGTTGAATCCTCATAAT 191894 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| || || ||||| ||| ||| || || Sbjct 191895 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 191954 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596 ||||| || | ||| | | || || | || || ||| || |||| ||| Sbjct 191955 GATATGAAACATTGGCCATTCAAAATTATCAACGATG-----GATCGAAACCTAAAATTC 192009 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || ||| ||| |||| | || |||||||| ||||||||| Sbjct 192010 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGT 192069 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| || Sbjct 192070 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 192129 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || || || | ||||| || || |||||||| || ||||||| | | Sbjct 192130 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 192189 Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | ||| | || ||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 192190 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 192248 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || || || | || | || || |||||| |||| ||||| || ||||||||| Sbjct 192249 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 192308 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || || | | || |||| ||| || || || || ||| |||| ||| Sbjct 192309 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 192368 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| |||||| | |||||||| || ||||| Sbjct 192369 GGTGACACTCATTTGGGTGGTGAGGACTTCGA 192400 >seq3681 Length=661693 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||||||||| ||||| Sbjct 18397 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 18456 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 18457 CAGCGGCTTATTTTTGCTGGTA 18478 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 10035 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 10094 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 10095 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 10154 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 10155 CAACGTCTGATTTTTGCTGGTA 10176 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 19250 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 19309 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 19310 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 19369 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 19370 CAACGTCTGATTTTTGCTGGTA 19391 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | || Sbjct 18005 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 18064 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 18065 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 18124 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 18125 CAACGTCTGATTTTTGCTGGTAA 18147 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 10318 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 10377 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 10378 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 10437 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 10438 CAACGTTTGATTTTTGCTGGTAA 10460 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 18970 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19029 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 19030 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19089 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 ||||| | |||||||||||| || Sbjct 19090 CAACGTTTGATTTTTGCTGGTGAA 19113 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 19533 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATCT 19592 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| ||||||||||||||||| || ||||| || ||||| Sbjct 19593 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 19652 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 19653 CAGCGTCTGATTTTTGCTGGTA 19674 >seq2423 Length=9717 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 3219 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 3160 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 3159 CAGCGGCTTATTTTTGCTGGTA 3138 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 2466 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 2407 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || |||||||| ||||| Sbjct 2406 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 2347 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 2346 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 2317 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || || | || Sbjct 3611 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 3552 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 3551 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 3492 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 3491 CAACGTCTGATTTTTGCTGGTAA 3469 >seq1681 Length=34527 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 29701 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 29760 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||||||||||||||| ||||| |||||||| |||||| Sbjct 29761 GATACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAG 29820 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 29821 CAACGTCTGATTTTTGCTGGTA 29842 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 29984 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 30043 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 30044 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 30103 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 30104 CAACGTTTGATTTTTGCTGGTAA 30126 >seq99 Length=156819 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 40256 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 40197 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || || || || | ||| || ||||||||||||||||||||||| || |||| Sbjct 40196 CAGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 40137 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 40136 AGCAACGATTGATATTTGCTGGTA 40113 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 40937 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 40878 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 40877 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 40818 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 40817 GCAAAGATTAATCTTTGCAGGTAA 40794 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | || Sbjct 39968 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 39909 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||| || |||||||||||||||||||||||||| |||||| Sbjct 39908 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 39849 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 39848 CAACGATTGATATTTGCTGGTA 39827 >seq3029 Length=236 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 7 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 66 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 67 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 126 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 127 CAACGTCTGATTTTTGCTGGTA 148 >seq266 Length=548 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | ||| Sbjct 345 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 286 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||| || ||||||||||||||||||||||| || |||||| Sbjct 285 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 226 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 225 CAACGATTGATATTTGCTGGTA 204 >seq3708 Length=1771 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 171868 ATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACA 171927 || ||||| || || ||||| || ||||| |||||| | || || || | || || ||| Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 171928 ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGA 171987 || || || | |||| ||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 171988 CTTATTTTTGCTGGTA 172003 || ||||||||||||| Sbjct 1651 CTGATTTTTGCTGGTA 1636 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || ||||| || ||||| |||||| | || || || | || Sbjct 1494 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 1435 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| |||||| Sbjct 1434 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 1375 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | ||||| |||||||| Sbjct 1374 CAACGTTTGATTTTCGCTGGTAA 1352 >seq529 Length=107346 Score = 120 bits (132), Expect = 4e-22 Identities = 320/485 (66%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || || | Sbjct 45944 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 46003 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || ||||| || || ||||| | || || ||||| | Sbjct 46004 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 46063 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | | |||| Sbjct 46064 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGTC 46123 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | |||||||||| | |||| ||| || ||| | | || || ||| Sbjct 46124 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 46182 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | || || ||||||| |||||| || Sbjct 46183 --GAAAAATCGAGCAAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTCA 46240 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| || ||| Sbjct 46241 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTATT 46300 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || || ||||| |||| ||| |||||| Sbjct 46301 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAAC 46360 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAAT 195808 | || || || || || || | | ||||| ||||| || ||| || |||| ||||| Sbjct 46361 GTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAA-TGTTGTACGAATCATCAAC 46419 Query 195809 GAACC 195813 ||||| Sbjct 46420 GAACC 46424 Score = 111 bits (122), Expect = 2e-19 Identities = 328/502 (65%), Gaps = 8/502 (2%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || ||||| || || || ||||| || || ||||||| || | || ||| Sbjct 47167 ATCAATCCAGACGAAGCTGTCGCCTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 47226 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || ||| | || |||||| |||| | || || || | | |||| Sbjct 47227 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 47280 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| || | ||| ||||| || | ||||| Sbjct 47281 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 47340 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || ||| ||||||||| Sbjct 47341 AAGAAATCCCAGATATTCAGCACCGCTGCCGACAATCAGCCCACAGTTACTATTCAAGTT 47400 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || | || || || ||||| ||||| | |||||| |||| Sbjct 47401 TTCGAAGGCGAACGA-CCAATGACCAAAGACAATCATCTTCTTGGGAAATTCGATCTGAC 47459 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | || || ||||| ||| | ||| |||||||| |||| Sbjct 47460 CGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACGT 47519 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || || ||| | ||||||| || || ||||| | | | ||||| | ||||| Sbjct 47520 GAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCAC 47579 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 |||||||||||| | || || || ||| || ||||| || ||| | | ||||| Sbjct 47580 CATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATGC 47639 Query 196852 GGAAAAGTACAGGGAAGAAGAC 196873 ||||| || |||||| ||| Sbjct 47640 CGAAAAATATGCGGAAGAGGAC 47661 Score = 89.7 bits (98), Expect = 7e-13 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| || ||||||||||| || ||| ||| |||||| | || Sbjct 46477 AACTGCTGCTGCAATTGCATACGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 46533 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 46534 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 46593 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||||||| | ||||| ||||||||||||| | ||| Sbjct 46594 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 46633 >seq2781 Length=253 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 40 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 99 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || ||||||||||| || || |||||||| ||||| Sbjct 100 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 159 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTT 172011 ||||| | |||||||||||||| ||| || Sbjct 160 CAACGTTTGATTTTTGCTGGTAAGCAGTTT 189 >seq1996 Length=320 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 171868 ATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACA 171927 || ||||| || || ||||| || ||||| |||||| | || || || | || || ||| Sbjct 320 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 261 Query 171928 ATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGA 171987 || || || | |||| ||| || || ||||||||||| |||||||| ||||| ||||| Sbjct 260 ATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAACGT 201 Query 171988 CTTATTTTTGCTGGTAA 172004 | |||||||||||||| Sbjct 200 TTGATTTTTGCTGGTAA 184 >seq2639 Length=264 Score = 105 bits (116), Expect = 9e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || |||||||| || ||||| |||||| | || || || | || Sbjct 137 ATGCAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 196 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||| Sbjct 197 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 256 Query 171982 CAACGACT 171989 ||||| || Sbjct 257 CAACGTCT 264 >seq3780 Length=218817 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 71162 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 71221 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 71222 TACTTTGTCCGATTACAATATTCAGAAAGG 71251 >seq1493 Length=366 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || ||||| |||||| | || || || | || Sbjct 239 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATCT 298 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||||| Sbjct 299 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 358 Query 171982 CAACGACT 171989 ||||| || Sbjct 359 CAACGTCT 366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || || ||||| || || | |||| ||| ||||||||||| ||||| |||||||| ||| Sbjct 13 TCTGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGAT 72 Query 171979 CAGCAACGACTTATTTTTGCTGGTA 172003 |||||||| || ||||||||||||| Sbjct 73 CAGCAACGTCTGATTTTTGCTGGTA 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657828487193280