Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq99 116 7e-21 seq2781 100 5e-16 seq2423 100 5e-16 seq1493 96.9 6e-15 seq3681 93.3 8e-14 seq2639 91.5 3e-13 seq1681 87.8 3e-12 seq3708 84.2 4e-11 >seq99 Length=156819 Score = 116 bits (128), Expect = 7e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| |||||||| || ||||||||||| || ||||| ||||| || ||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||| | |||| || || || || | ||||||||||| ||||||||||| || || Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376 || || || || ||||| ||||| | | | |||| ||| Sbjct 40914 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 40952 >seq2781 Length=253 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || |||||||| || | |||||||| || || ||||| ||||||||||| Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| ||| | |||| || ||||| || | || ||||| | |||||| ||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCATT 39 >seq2423 Length=9717 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || |||||||| || | |||||||| || || ||||| ||||||||||| Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| ||| | |||| || ||||| || | || ||||| | |||||| ||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCATT 2467 >seq1493 Length=366 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||||||||| |||||| ||||| ||| || ||| Sbjct 360 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 301 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||||| || || ||||| || ||||| || || || || |||||| Sbjct 300 TCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTTGC 241 Query 193359 ATT 193361 ||| Sbjct 240 ATT 238 >seq3681 Length=661693 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| |||||| | Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034 >seq2639 Length=264 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || ||||||||||||||||| |||||| ||||| ||| || ||| Sbjct 258 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 199 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||||| || || ||||| || || || || || || || |||||| Sbjct 198 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTTGC 139 Query 193359 ATT 193361 ||| Sbjct 138 ATT 136 >seq1681 Length=34527 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | || ||||| || || ||||||||||||||||| || ||| | Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | || || ||||| || || || Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700 >seq3708 Length=1771 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 ||||| | | || |||||||| | | || ||||| || || ||||||||||||||||| Sbjct 1628 TAATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 1687 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 |||||| ||||| ||| || ||||| || | || ||||| | || || ||||| Sbjct 1688 AATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1747 Query 193331 ACCTGTTAGCGTTTTTACAAATAT 193354 || || || || || ||||| || Sbjct 1748 GCCGGTAAGAGTCTTAACAAAAAT 1771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899608022815680