Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq99 127 4e-24
seq266 123 5e-23
seq3681 116 7e-21
seq2423 116 7e-21
seq1681 111 3e-19
seq2781 109 1e-18
seq3708 105 1e-17
seq1493 105 1e-17
seq1996 102 2e-16
seq3029 100 6e-16
seq2639 96.9 7e-15
>seq99
Length=156819
Score = 127 bits (140), Expect = 4e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||||
Sbjct 39827 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 39886
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | ||| || | |||||||| | || || ||||| |||||||
Sbjct 39887 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 39946
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
||||||| | ||| |||||||||
Sbjct 39947 ATGTTTTCACAAAAATCTGCATT 39969
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || |||||||| || || ||||| |||||||| ||||||
Sbjct 40113 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 40172
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||| ||||| || | |||||| | |||||||| | || || ||||| |||||||
Sbjct 40173 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 40232
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||||| | ||| ||||||||
Sbjct 40233 ATGTTTTCACAAAAATCTGCAT 40254
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||||||||| || |||||||| || || ||||| ||||| || ||||||
Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | ||||| | ||| |||||||| || || ||||| |||||
Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| ||| || | |||||||||||
Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936
>seq266
Length=548
Score = 123 bits (136), Expect = 5e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || |||||||| || || ||||| |||||||| ||||||
Sbjct 204 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 263
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||| ||||| || | |||||| | |||||||| | || || ||||| |||||||
Sbjct 264 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 323
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
||||||| | ||| |||||||||
Sbjct 324 ATGTTTTCACAAAAATCTGCATT 346
>seq3681
Length=661693
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337
Score = 114 bits (126), Expect = 3e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | || || | ||| ||||| |||||||||||||| |||||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
| ||||| | |||||||||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| |||||||| ||||| ||||||||
Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| ||| | ||| || | ||||||||||| || || ||||| || ||
Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| || |||| ||| || ||||||
Sbjct 10340 AGAGTCTTAACAAAAATTTGCATT 10317
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||||||||||||||| |||||
Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||| | || || ||||| || || |
Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 10056 GAGTCTTAACAAAAATTTGCATT 10034
>seq2423
Length=9717
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 3138 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 3197
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 3198 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 3257
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 3258 ACGTTTTCACAAATATCTGCAT 3279
Score = 113 bits (124), Expect = 9e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | || || | ||| ||||| |||||||||||||| |||||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 192514 AATGTTTTAATAAATATCTGCATTT 192538
| ||||| | ||||||||||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|| || ||||||||||| || || | |||||||| ||||| ||||| |||||||||||
Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || |||||
Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| || || ||||||
Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCATT 2467
>seq1681
Length=34527
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| |||||||| ||||| ||||||||
Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| ||| | ||| || | ||||||||||| || || ||||| || ||
Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| || |||| ||| || ||||||
Sbjct 30006 AGAGTCTTAACAAAAATTTGCATT 29983
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| ||||||||||||||||| || ||
Sbjct 29842 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGC 29783
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||| | || || ||||| || || |
Sbjct 29782 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29723
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 29722 GAGTCTTAACAAAAATTTGCATT 29700
>seq2781
Length=253
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|| || ||||||||||| || || | |||||||| ||||| ||||| |||||||||||
Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || |||||
Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||| || || ||||||
Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCATT 39
>seq3708
Length=1771
Score = 105 bits (116), Expect = 1e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| |||||||| || || || | || ||||| ||||| |||||||| ||||| ||
Sbjct 1345 CAATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 1404
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||| ||||||||| ||| | ||| || | ||||||||||| || || |||||
Sbjct 1405 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 1464
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | || |||| ||| || ||||||
Sbjct 1465 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 1495
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
|||| | |||||||||| || | | || ||||| ||||| |||||||||||||||||
Sbjct 1629 AATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 1688
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| ||||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 1689 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 1748
Query 192508 CCAGTTAATGTTTTAATAAATAT 192530
|| || | || |||| ||| ||
Sbjct 1749 CCGGTAAGAGTCTTAACAAAAAT 1771
>seq1493
Length=366
Score = 105 bits (116), Expect = 1e-17
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||| | |
Sbjct 360 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 301
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||||||||||| || |||||||| || |||| || |||| || || |||
Sbjct 300 TCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTTGC 241
Query 192535 ATT 192537
|||
Sbjct 240 ATT 238
>seq1996
Length=320
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| ||
Sbjct 177 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 236
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||| ||||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 237 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 296
Query 192507 ACCAGTTAATGTTTTAATAAATAT 192530
|| || | || |||| ||| ||
Sbjct 297 GCCGGTAAGAGTCTTAACAAAAAT 320
>seq3029
Length=236
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| |||||||| ||||| ||||||||
Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 89
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| ||| | ||| || | ||||||||||| || || ||||| || || |
Sbjct 88 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 29
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 28 GAGTCTTAACAAAAATTTGCATT 6
>seq2639
Length=264
Score = 96.9 bits (106), Expect = 7e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||| | |
Sbjct 258 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 199
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||||||||||| || || ||||| || || | || |||| || || |||
Sbjct 198 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTTGC 139
Query 192535 ATT 192537
|||
Sbjct 138 ATT 136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984427981307400
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