Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq99 127 4e-24 seq266 123 5e-23 seq3681 116 7e-21 seq2423 116 7e-21 seq1681 111 3e-19 seq2781 109 1e-18 seq3708 105 1e-17 seq1493 105 1e-17 seq1996 102 2e-16 seq3029 100 6e-16 seq2639 96.9 7e-15 >seq99 Length=156819 Score = 127 bits (140), Expect = 4e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || ||||||||||| || ||||| |||||||| |||||| Sbjct 39827 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 39886 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | ||| || | |||||||| | || || ||||| ||||||| Sbjct 39887 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 39946 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | ||| ||||||||| Sbjct 39947 ATGTTTTCACAAAAATCTGCATT 39969 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 40113 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 40172 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | |||||| | |||||||| | || || ||||| ||||||| Sbjct 40173 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 40232 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||||| | ||| |||||||| Sbjct 40233 ATGTTTTCACAAAAATCTGCAT 40254 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| |||||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||| ||||| || | ||||| | ||| |||||||| || || ||||| ||||| Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | ||| || | ||||||||||| Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936 >seq266 Length=548 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || |||| || |||||||| || || ||||| |||||||| |||||| Sbjct 204 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 263 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||| ||||| || | |||||| | |||||||| | || || ||||| ||||||| Sbjct 264 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 323 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 ||||||| | ||| ||||||||| Sbjct 324 ATGTTTTCACAAAAATCTGCATT 346 >seq3681 Length=661693 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || || | ||| ||||| |||||||||||||| ||||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 | ||||| | ||||||||||||||| Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | |||||||| ||||| |||||||| ||||| |||||||| Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || |||| ||| || |||||| Sbjct 10340 AGAGTCTTAACAAAAATTTGCATT 10317 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||||||||||||||| ||||| Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||| | || || ||||| || || | Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 10056 GAGTCTTAACAAAAATTTGCATT 10034 >seq2423 Length=9717 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| ||||| || |||||||| ||||| || || Sbjct 3138 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 3197 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||||| || | |||||||| || ||||| || ||||| ||||| || || | Sbjct 3198 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 3257 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||||||||| Sbjct 3258 ACGTTTTCACAAATATCTGCAT 3279 Score = 113 bits (124), Expect = 9e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || | | |||||||| ||||| ||||| |||||||| || |||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | || || | ||| ||||| |||||||||||||| ||||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 192514 AATGTTTTAATAAATATCTGCATTT 192538 | ||||| | |||||||||||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCATT 2467 >seq1681 Length=34527 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | |||||||| ||||| |||||||| ||||| |||||||| Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | || |||| ||| || |||||| Sbjct 30006 AGAGTCTTAACAAAAATTTGCATT 29983 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| ||||||||||||||||| || || Sbjct 29842 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGC 29783 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||| | || || ||||| || || | Sbjct 29782 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29723 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 29722 GAGTCTTAACAAAAATTTGCATT 29700 >seq2781 Length=253 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||| || || |||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCATT 39 >seq3708 Length=1771 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| |||||||| || || || | || ||||| ||||| |||||||| ||||| || Sbjct 1345 CAATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 1404 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| ||||||||| ||| | ||| || | ||||||||||| || || ||||| Sbjct 1405 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 1464 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || |||| ||| || |||||| Sbjct 1465 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 1495 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 |||| | |||||||||| || | | || ||||| ||||| ||||||||||||||||| Sbjct 1629 AATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 1688 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||||||||| ||| | ||| || | ||||||||| | || || ||||| Sbjct 1689 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 1748 Query 192508 CCAGTTAATGTTTTAATAAATAT 192530 || || | || |||| ||| || Sbjct 1749 CCGGTAAGAGTCTTAACAAAAAT 1771 >seq1493 Length=366 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||| | | Sbjct 360 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 301 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||||||||||| || |||||||| || |||| || |||| || || ||| Sbjct 300 TCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTTGC 241 Query 192535 ATT 192537 ||| Sbjct 240 ATT 238 >seq1996 Length=320 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| ||||||||||| || || | |||||||| ||||| |||||||| ||||| || Sbjct 177 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 236 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 |||||| ||||||||| ||| | ||| || | ||||||||| | || || ||||| Sbjct 237 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 296 Query 192507 ACCAGTTAATGTTTTAATAAATAT 192530 || || | || |||| ||| || Sbjct 297 GCCGGTAAGAGTCTTAACAAAAAT 320 >seq3029 Length=236 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | || ||||| ||||| |||||||| ||||| |||||||| Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 89 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| ||| | ||| || | ||||||||||| || || ||||| || || | Sbjct 88 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 29 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| ||| || |||||| Sbjct 28 GAGTCTTAACAAAAATTTGCATT 6 >seq2639 Length=264 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||| | | Sbjct 258 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 199 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||||||||||| || || ||||| || || | || |||| || || ||| Sbjct 198 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTTGC 139 Query 192535 ATT 192537 ||| Sbjct 138 ATT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984427981307400