Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq99 123 5e-23 seq2781 118 2e-21 seq2423 118 2e-21 seq266 118 2e-21 seq3681 116 7e-21 seq1681 111 3e-19 seq1493 109 1e-18 seq3708 105 1e-17 seq1996 104 4e-17 seq3029 100 5e-16 seq2639 100 5e-16 >seq99 Length=156819 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || |||||||| || ||||| |||||||| |||||| Sbjct 39827 TACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTAC 39886 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || ||||| || | |||||||| | || || ||||| ||||||| Sbjct 39887 TTTTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 39946 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||||| | || ||||||||| Sbjct 39947 ATGTTTTCACAAAAATCTGCATT 39969 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || |||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||| ||||| || || ||||| | ||| |||||||| || || ||||| ||||| Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||| || | |||||||||||| Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || ||||| || || ||||| |||||||| |||||| Sbjct 40113 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 40172 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| ||||| || |||||||| | |||||||| | || || ||||| ||||||| Sbjct 40173 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 40232 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||||||| Sbjct 40233 ATGTTTTCACAAAAATCTGCAT 40254 >seq2781 Length=253 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 188 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 129 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 128 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 69 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 68 CCAGTAAGGGTCTTAACGAAAATTTGCATT 39 >seq2423 Length=9717 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| Sbjct 2318 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 2377 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| Sbjct 2378 ATTTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 2437 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || |||| ||| || |||||| Sbjct 2438 CCAGTAAGGGTCTTAACGAAAATTTGCATT 2467 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 3138 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 3197 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 3198 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 3257 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 3258 ACGTTTTCACAAATATCTGCAT 3279 Score = 113 bits (124), Expect = 8e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || || || | ||| ||||| |||||||||||||| ||||| Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 172047 AATGTTTTAATGAATATCTGCATTT 172071 | ||||| | ||||||||||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613 >seq266 Length=548 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || ||||| || || ||||| |||||||| |||||| Sbjct 204 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 263 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| ||||| || |||||||| | |||||||| | || || ||||| ||||||| Sbjct 264 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 323 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 ||||||| | || ||||||||| Sbjct 324 ATGTTTTCACAAAAATCTGCATT 346 >seq3681 Length=661693 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || || || | ||| ||||| |||||||||||||| ||||| Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||||| ||| ||||| || | ||||||||||| || || ||||| || || Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || |||| || || |||||| Sbjct 10340 AGAGTCTTAACAAAAATTTGCATT 10317 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || |||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 19113 TTCACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 19054 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 ||| ||||| || ||||| || | ||||||||| | ||| || ||||| ||||| Sbjct 19053 CCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGT 18994 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 | || |||| ||| || |||||| Sbjct 18993 AAGGGTCTTAACGAAAATTTGCATT 18969 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||||||||||||||| ||||| Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 10056 GAGTCTTAACAAAAATTTGCATT 10034 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||| ||||| |||||||| Sbjct 19391 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 19332 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 19331 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 19272 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 19271 GAGTCTTAACAAAAATTTGCATT 19249 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || || || ||||| || |||||||| || || Sbjct 19674 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 19615 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| | |||||| || | ||| ||||| | || |||||||| ||||||| Sbjct 19614 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTA 19555 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 19554 GGGTCTTAACAAAAATTTGCATT 19532 >seq1681 Length=34527 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||||| ||| ||||| || | ||||||||||| || || ||||| || || Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || |||| || || |||||| Sbjct 30006 AGAGTCTTAACAAAAATTTGCATT 29983 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||||||||||||||| || || Sbjct 29842 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGC 29783 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || | Sbjct 29782 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29723 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 29722 GAGTCTTAACAAAAATTTGCATT 29700 >seq1493 Length=366 Score = 109 bits (120), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||| ||| Sbjct 360 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 301 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||||||||| || |||||||| || |||| || |||| ||| || ||| Sbjct 300 TCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAATTTGC 241 Query 172068 ATT 172070 ||| Sbjct 240 ATT 238 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| ||||||||||||||||| ||||| Sbjct 97 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 38 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTC 172024 ||||||||| ||| ||||| || | ||||||||| Sbjct 37 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTC 1 >seq3708 Length=1771 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||| ||||| || | || || || ||||| |||||||| ||||| || Sbjct 1345 CAATTACTTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTG 1404 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||||| || || ||||| Sbjct 1405 TATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTT 1464 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || |||| || || |||||| Sbjct 1465 GCCGGTAAGAGTCTTAACAAAAATTTGCATT 1495 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||| | ||||||||||||| | | || || || ||||| ||||||||||||||||| Sbjct 1629 AATTCTATACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 1688 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 1689 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTG 1748 Query 172041 CCAGTTAATGTTTTAA 172056 || || | || |||| Sbjct 1749 CCGGTAAGAGTCTTAA 1764 >seq1996 Length=320 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| |||||||||||||| || | ||||| || ||||| |||||||| ||||| || Sbjct 177 CAATTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 236 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| ||||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 237 TATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 296 Query 172040 ACCAGTTAATGTTTTAA 172056 || || | || |||| Sbjct 297 GCCGGTAAGAGTCTTAA 313 >seq3029 Length=236 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||| ||||| |||||||| Sbjct 148 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 89 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||||| || || ||||| || || | Sbjct 88 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAA 29 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 28 GAGTCTTAACAAAAATTTGCATT 6 >seq2639 Length=264 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||| ||| Sbjct 258 TGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTATTGTA 199 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||||||||| || || ||||| || || | || |||| ||| || ||| Sbjct 198 TCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAAATTTGC 139 Query 172068 ATT 172070 ||| Sbjct 138 ATT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905089340239200