Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3681 105 6e-18 seq2423 105 6e-18 seq2781 104 2e-17 seq1681 104 2e-17 seq1996 95.1 1e-14 seq3708 93.3 4e-14 seq1493 93.3 4e-14 seq2639 87.8 2e-12 seq929 87.8 2e-12 >seq3681 Length=661693 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || | Sbjct 18005 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 18064 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || || || ||||| ||||| || ||||||||| Sbjct 18065 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 18124 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 18125 CAACGTCTGATTTTTGCTGGTAA 18147 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 10035 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 10094 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 10095 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 10154 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 10155 CAACGTCTGATTTTTGCTGG 10174 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 10318 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 10377 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || |||||| Sbjct 10378 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 10437 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 10438 CAACGTTTGATTTTTGCTGGTAA 10460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | | Sbjct 18336 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 18395 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| |||||| ||||| |||||||||||||| || || || ||||| Sbjct 18396 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 18455 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | || ||||| || Sbjct 18456 ACAGCGGCTTATTTTTGCTGG 18476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 18970 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 19029 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || || |||||||| || || |||||| Sbjct 19030 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 19089 Query 24824 CAACGTTTGATCTTTGCCGG-GAAACAG 24850 ||||||||||| ||||| || ||| ||| Sbjct 19090 CAACGTTTGATTTTTGCTGGTGAAGCAG 19117 >seq2423 Length=9717 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || | Sbjct 3611 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 3552 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || || || ||||| ||||| || ||||||||| Sbjct 3551 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 3492 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 3491 CAACGTCTGATTTTTGCTGGTAA 3469 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 2466 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 2407 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| ||| || ||||| ||||| ||||| || || |||||| Sbjct 2406 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 2347 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 2346 CAACGTTTGATTTTTGCTGGTAAGCAG 2320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | | Sbjct 3280 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 3221 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| |||||| ||||| |||||||||||||| || || || ||||| Sbjct 3220 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 3161 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | || ||||| || Sbjct 3160 ACAGCGGCTTATTTTTGCTGG 3140 >seq2781 Length=253 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 40 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 99 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| ||| || ||||| ||||| ||||| || || |||||| Sbjct 100 GATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 159 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 160 CAACGTTTGATTTTTGCTGGTAAGCAG 186 >seq1681 Length=34527 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 29701 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 29760 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 29761 GATACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAG 29820 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 29821 CAACGTCTGATTTTTGCTGG 29840 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 29984 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 30043 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || |||||| Sbjct 30044 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 30103 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 30104 CAACGTTTGATTTTTGCTGGTAA 30126 >seq1996 Length=320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 24710 ATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACA 24769 || ||| |||| || || ||||| ||||| || || | ||||||||| | | || ||| Sbjct 320 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 261 Query 24770 GTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGT 24829 |||| | |||||| || || || || || |||||||| || || |||||||||||| Sbjct 260 ATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAACGT 201 Query 24830 TTGATCTTTGCCGGGAA 24846 ||||| ||||| || || Sbjct 200 TTGATTTTTGCTGGTAA 184 >seq3708 Length=1771 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24710 ATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACA 24769 || ||| |||| || || ||||| ||||| || || | ||||||||| | | || ||| Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 24770 GTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGT 24829 |||| | |||||| || || ||||| ||||||||||| || || ||||| |||||| Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 24830 TTGATCTTTGCCGG 24843 |||| ||||| || Sbjct 1651 CTGATTTTTGCTGG 1638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 1494 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 1435 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || ||||| Sbjct 1434 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 1375 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| || || || || Sbjct 1374 CAACGTTTGATTTTCGCTGGTAA 1352 >seq1493 Length=366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||||||| ||||| || || | ||||||||| | | Sbjct 239 ATGCAAATTTTCGTTAAGACTCTAACCGGCAAAACCATCACCTTAGAAGTAGAACCATCT 298 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || ||||| ||||||||||| || || |||||| Sbjct 299 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 358 Query 24824 CAACGT 24829 |||||| Sbjct 359 CAACGT 364 >seq2639 Length=264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 137 ATGCAAATTTTCGTTAAGACCCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 196 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || ||||| ||||||||||| || || |||||| Sbjct 197 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 256 Query 24824 CAACGT 24829 |||||| Sbjct 257 CAACGT 262 >seq929 Length=70851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| |||||||| | |||| || ||| || || ||||| | |||||| ||||| Sbjct 57251 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 57310 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||||| || || ||||||||||| | |||| |||||||||| ||||| | ||| | | Sbjct 57311 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGAC 57370 Query 139243 TCTATAAT 139250 || ||||| Sbjct 57371 TCAATAAT 57378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449874407778720