Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq99 114 2e-20
seq3681 111 2e-19
seq266 109 9e-19
seq2423 105 1e-17
seq2781 100 4e-16
>seq99
Length=156819
Score = 114 bits (126), Expect = 2e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 39967 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 39908
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| |
Sbjct 39907 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 39848
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 39847 AACGATTGATATTTGCTGGTA 39827
Score = 109 bits (120), Expect = 9e-19
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| || || | ||||||||||| ||||||||||| || | || ||||| | || |
Sbjct 40253 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 40195
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || |||||
Sbjct 40194 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 40135
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
||| || | || ||||| ||||
Sbjct 40134 CAACGATTGATATTTGCTGGTA 40113
Score = 98.7 bits (108), Expect = 2e-15
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| |||||| | || ||| | || |||||||| || || | || || |||| || |
Sbjct 40935 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 40877
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || ||||||| |||| |||||| || ||| ||||||||||| || |||||
Sbjct 40876 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 40817
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
|||||| | || |||||||||||
Sbjct 40816 CAAAGATTAATCTTTGCAGGTAA 40794
>seq3681
Length=661693
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 18338 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 18397
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||||||||| |||||||
Sbjct 18398 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAAC 18457
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 18458 AGCGGCTTATTTTTGCTGGTA 18478
Score = 100 bits (110), Expect = 4e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 18971 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 19030
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| |||||||
Sbjct 19031 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 19090
Query 146152 AAAGACTCATTTTTGCAGGTAAA 146174
|| | | |||||||| ||| ||
Sbjct 19091 AACGTTTGATTTTTGCTGGTGAA 19113
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 18006 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCTG 18065
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 18066 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 18125
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 18126 AACGTCTGATTTTTGCTGGTAA 18147
>seq266
Length=548
Score = 109 bits (120), Expect = 9e-19
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| || || | ||||||||||| ||||||||||| || | || ||||| | || |
Sbjct 344 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 286
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || |||||
Sbjct 285 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 226
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
||| || | || ||||| ||||
Sbjct 225 CAACGATTGATATTTGCTGGTA 204
>seq2423
Length=9717
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 3278 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 3219
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||||
Sbjct 3218 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 3159
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 3158 AGCGGCTTATTTTTGCTGGTA 3138
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 2465 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 2406
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 2405 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 2346
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 2345 AACGTTTGATTTTTGCTGGTAAGCAGTT 2318
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 3610 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCTG 3551
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 3550 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 3491
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 3490 AACGTCTGATTTTTGCTGGTAA 3469
>seq2781
Length=253
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 41 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 100
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 101 ATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 160
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||||| || ||
Sbjct 161 AACGTTTGATTTTTGCTGGTAAGCAGTT 188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786125873122080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |