Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3725 340 1e-87 seq529 147 2e-29 seq1140 111 1e-18 seq929 89.7 4e-12 >seq3725 Length=229766 Score = 340 bits (376), Expect = 1e-87 Identities = 496/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 192414 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 192355 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 192354 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 192295 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 192294 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 192235 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 192234 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 192175 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 192174 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 192115 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 192114 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 192055 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 192054 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 191995 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 ||| | || |||| ||| |||||||||| ||||||||| || || || |||| Sbjct 191994 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 191935 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | || Sbjct 191934 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCGA 191875 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||||| ||| || |||||||||||||| |||| || || || || | |||||| || Sbjct 191874 CTTGATTTTTTGCCGCATCTCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 191815 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 191814 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 191755 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 191754 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 191714 Score = 114 bits (126), Expect = 1e-19 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 192883 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 192824 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 || ||||||| ||| || || || | || |||||||| |||| || || || || || Sbjct 192823 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 192765 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 192764 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 192705 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 192704 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 192645 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | ||||| |||||| Sbjct 192644 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 192603 >seq529 Length=107346 Score = 147 bits (162), Expect = 2e-29 Identities = 345/512 (67%), Gaps = 18/512 (4%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 46424 GGTTCGTTGATGATTCGTACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 46365 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| || ||||| || | ||||||| | | |||||||| Sbjct 46364 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 46305 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 46304 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 46245 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | | | || | ||||| | | | Sbjct 46244 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 46189 Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 || || || ||||||||| ||| ||| | ||||| ||| | || | Sbjct 46188 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 46129 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722 |||| ||| | | || |||||||| || | ||||| ||||| | || | | Sbjct 46128 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 46070 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779 ||| ||| || || || || |||||| | | || | ||||| | ||||| || | Sbjct 46069 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 46010 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || | ||||| || |||||||| |||||||||||||| |||||| | | || | Sbjct 46009 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATTCTTGAAAACCC 45950 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 | || ||||||| || ||| || |||||| Sbjct 45949 CAAC---ACTAAAAATTATTC--AATTCAATA 45923 >seq1140 Length=61622 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 25931 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 25872 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 |||||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 25871 GTAACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 25812 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 25811 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 25768 >seq929 Length=70851 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654 |||| ||| |||||||||||| | ||||||| | |||| || ||||| ||||| || | | Sbjct 56230 TACAAGACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCCGCTGAAAGGGGA 56171 Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714 | || |||| ||| | ||| ||||| | |||| | | || | || ||| | | Sbjct 56170 GCATTCATTGACCAATCCCAGTCGTTGAATATTCACATAGCCGAGCCGAATTATGCTAAA 56111 Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774 || | || | || || | |||| ||| ||||| ||||| || ||||| |||||| Sbjct 56110 TTGACATCAATGCATTTCTACGGCTGGAAGAAGGGTCTGAAAACTGGGATGTACTATTTG 56051 Query 164775 AGATCTAAACCAGC 164788 ||| | || ||||| Sbjct 56050 AGAACCAAGCCAGC 56037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740427929028024