Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 89.7 5e-13
seq2423 87.8 2e-12
seq1681 86.0 6e-12
seq99 82.4 7e-11
>seq3681
Length=661693
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | ||||||||||||||||| || || || |||||||| || ||||||
Sbjct 10176 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGC 10117
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | || | || || | ||||||||||| | || | ||| |||||||| |
Sbjct 10116 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 10057
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
|| || || || ||||||||
Sbjct 10056 GAGTCTTAACAAAAATTTGCAT 10035
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | ||| | ||||| | |||||| ||||| | ||| | || || || |||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCAT 18005
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 18478 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGC 18419
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 18418 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 18359
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 18358 ACGTTTTCACAAATATCTGCAT 18337
>seq2423
Length=9717
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328
||||||||| | ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388
|| | | ||| | ||||| | |||||| ||||| | ||| | || || || |||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 137389 AATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCAT 3611
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | || || || || ||||| || || |||||||||||||| ||| ||
Sbjct 3138 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 3197
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | ||| | || |||| || || ||||||| || | ||| || || ||||
Sbjct 3198 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 3257
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
| ||||| || ||||| |||||
Sbjct 3258 ACGTTTTCACAAATATCTGCAT 3279
>seq1681
Length=34527
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | ||||||||||||||||| || || || |||||||| || ||| ||
Sbjct 29842 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGC 29783
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||||| | || | || || | ||||||||||| | || | ||| |||||||| |
Sbjct 29782 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAA 29723
Query 137390 ATGTTTTTACGAATATTTGCAT 137411
|| || || || ||||||||
Sbjct 29722 GAGTCTTAACAAAAATTTGCAT 29701
>seq99
Length=156819
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329
|||||||| | |||| ||||||||||| || || |||||||| || || ||||||
Sbjct 40113 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 40172
Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389
||| | | ||| | ||| |||| || |||||||| | || | || || || || |
Sbjct 40173 TTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 40232
Query 137390 ATGTTTTTACGAATATTTGCATA 137412
||||||| || || || ||||||
Sbjct 40233 ATGTTTTCACAAAAATCTGCATA 40255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488518815556800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |