Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4025 86.0 1e-11 >seq4025 Length=183848 Score = 86.0 bits (94), Expect = 1e-11 Identities = 202/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 143004 GATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCC-CTT 143062 ||||| || | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 149053 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCACTG 149112 Query 143063 AACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTAT 143122 ||| ||||| || | || ||||| ||| || || || |||||||| ||||| | | Sbjct 149113 GACG-CAAATTCGATGGCGAAAATTTGCAATGGAATTTGTGATAATTTGTTAACAAGTTT 149171 Query 143123 AGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTAT 143182 || |||| |||||| || || | | | |||||||| ||||||| | || Sbjct 149172 GGTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACAT 149231 Query 143183 GTGGGAACATCCTATTACAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCAT 143239 ||||||||| || | || | ||||| || | | ||| |||| | | || |||| Sbjct 149232 GTGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAA 149291 Query 143240 AGAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 |||| | ||||| || ||| || || ||||| ||| || ||||||||||||| Sbjct 149292 AGAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 149351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903364629152640