Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4090 86.0 8e-12 seq2324 86.0 8e-12 seq331 86.0 8e-12 >seq4090 Length=177276 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 86120 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 86179 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 86180 CCGGCCGGGGAG 86191 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 86817 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 86876 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 86877 CCGGCCGGGGAG 86888 >seq2324 Length=348778 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 167052 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 166993 Query 8718 CCCGACGAGGAGCAG 8732 || | || |||| || Sbjct 166992 CCGGCCGGGGAGAAG 166978 >seq331 Length=588470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 516913 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 516854 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 516853 CCGGCCGGGGAG 516842 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 516916 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 516857 Query 11786 TTCCCCGACGAGGAG 11800 ||||| | || |||| Sbjct 516856 TTCCCGGCCGGGGAG 516842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652811145850560