Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq4090 86.0 8e-12
seq2324 86.0 8e-12
seq331 86.0 8e-12
>seq4090
Length=177276
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 86120 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 86179
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 86180 CCGGCCGGGGAG 86191
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 86817 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 86876
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 86877 CCGGCCGGGGAG 86888
>seq2324
Length=348778
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 167052 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 166993
Query 8718 CCCGACGAGGAGCAG 8732
|| | || |||| ||
Sbjct 166992 CCGGCCGGGGAGAAG 166978
>seq331
Length=588470
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 516913 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 516854
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 516853 CCGGCCGGGGAG 516842
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 516916 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 516857
Query 11786 TTCCCCGACGAGGAG 11800
||||| | || ||||
Sbjct 516856 TTCCCGGCCGGGGAG 516842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652811145850560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |