Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1327 132 7e-25 >seq1327 Length=48099 Score = 132 bits (146), Expect = 7e-25 Identities = 237/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||||||||| || || || ||||| || ||||| ||||| |||| || |||| ||| Sbjct 21744 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 21685 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098 ||| |||||||||||||| || || ||||| ||| || || || ||| Sbjct 21684 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCG 21625 Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158 ||||| || | |||| |||| |||||| || |||||||| || ||||| | Sbjct 21624 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 21568 Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215 || | | ||| || |||| ||| || | |||| || || || || || ||||| || Sbjct 21567 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTT 21509 Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 || || ||||| ||| ||| | || || ||| | || ||||||||||| ||||||||| Sbjct 21508 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 21451 Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 || || |||||||| | ||| ||| ||||| || Sbjct 21450 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 21413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177413432620088