Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq3681 105 7e-18
seq2781 105 7e-18
seq2423 105 7e-18
seq1681 96.9 4e-15
seq1327 96.9 4e-15
seq1493 95.1 1e-14
seq3708 89.7 5e-13
seq3029 87.8 2e-12
seq266 87.8 2e-12
seq99 86.0 6e-12
>seq3681
Length=661693
Score = 105 bits (116), Expect = 7e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||| ||| || |||||||| || || || ||||| || ||||||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || || | |||||| || | |||||| || |||||||||||||| || ||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716
| |||||| || || || ||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATTTT 18002
Score = 102 bits (112), Expect = 8e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| ||||||||||| |
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||||||| || ||||| || || || ||||| || || || |||||
Sbjct 10460 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 10401
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||| || || | ||| || || | || || ||||| |||||
Sbjct 10400 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 10341
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
| ||| ||||| ||||||||||||
Sbjct 10340 AGAGTCTTAACAAAAATTTGCATT 10317
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||||||| || ||||| || || || ||||| || || || ||||| |
Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | ||| || ||||| || || |
Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||||||||||||||||
Sbjct 18989 GTCTTAACGAAAATTTGCATT 18969
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || ||||| || || || ||||| |
Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 19269 GTCTTAACAAAAATTTGCATT 19249
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| |||||| ||||| || || || || || || |||||||| || |
Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | |||||| || | || |||||||| || ||||
Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 19553
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 19552 GTCTTAACAAAAATTTGCATT 19532
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||| | ||||| ||||| || || ||||||||||| |||||||| || |
Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || |||| || || || || ||||| ||||| || || ||
Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || || || |||||
Sbjct 18356 GTTTTCACAAATATCTGCAT 18337
>seq2781
Length=253
Score = 105 bits (116), Expect = 7e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626
||| || || |||||||||||||| || ||||| || || || || ||||| ||||||||
Sbjct 186 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 127
Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686
|||| ||| || || | ||| || || | ||| || || | ||| || ||||| ||
Sbjct 126 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 67
Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | || ||||||||||||||||||
Sbjct 66 AGTAAGGGTCTTAACGAAAATTTGCATT 39
>seq2423
Length=9717
Score = 105 bits (116), Expect = 7e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626
||| || || |||||||||||||| || ||||| || || || || ||||| ||||||||
Sbjct 2320 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 2379
Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686
|||| ||| || || | ||| || || | ||| || || | ||| || ||||| ||
Sbjct 2380 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 2439
Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | || ||||||||||||||||||
Sbjct 2440 AGTAAGGGTCTTAACGAAAATTTGCATT 2467
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||| ||| || |||||||| || || || ||||| || ||||||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || || | |||||| || | |||||| || |||||||||||||| || ||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 134691 AAAGTTTTAACGAAAATTTGCATTT 134715
| |||||| || || || |||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATTT 3613
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||| | ||||| ||||| || || ||||||||||| |||||||| || |
Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || |||| || || || || ||||| ||||| || || ||
Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || || || |||||
Sbjct 3260 GTTTTCACAAATATCTGCAT 3279
>seq1681
Length=34527
Score = 96.9 bits (106), Expect = 4e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| |||||||| || |
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||||||| || ||||| || || || ||||| || || || |||||
Sbjct 30126 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 30067
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||| || || | ||| || || | || || ||||| |||||
Sbjct 30066 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 30007
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
| ||| ||||| ||||||||||||
Sbjct 30006 AGAGTCTTAACAAAAATTTGCATT 29983
>seq1327
Length=48099
Score = 96.9 bits (106), Expect = 4e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802
||||||| || || |||| |||||||||||||| | ||||||||| | || || ||||
Sbjct 21414 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 21473
Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862
| | | ||||||| ||| ||||| |||||||| || | ||| || ||| |||||||
Sbjct 21474 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 21533
Query 21863 CCACCA 21868
| ||||
Sbjct 21534 CGACCA 21539
>seq1493
Length=366
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 134588 ACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAA 134647
||| || ||||| || || || |||||||| ||||||||||| ||| || || |
Sbjct 364 ACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCTAT 305
Query 134648 TGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT 134707
||| || || | ||| || || | || |||||||| ||||||| ||| |||||||||||
Sbjct 304 TGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAAAT 245
Query 134708 TTGCATT 134714
|||||||
Sbjct 244 TTGCATT 238
>seq3708
Length=1771
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || ||||||||||| |||||||| || || || ||||| || || || |||||
Sbjct 1352 TTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 1411
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||| || || | ||| || || | || || ||||| |||||
Sbjct 1412 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 1471
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
| ||| ||||| ||||||||||||
Sbjct 1472 AGAGTCTTAACAAAAATTTGCATT 1495
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| ||||||||||| |
Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 1757
Query 134694 GTTTTAACGAAAAT 134707
|| ||||| |||||
Sbjct 1758 GTCTTAACAAAAAT 1771
>seq3029
Length=236
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || ||||| || || || ||||| |
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
>seq266
Length=548
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| |
Sbjct 206 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 265
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | || || || | || || ||||| || |||||
Sbjct 266 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 325
Query 134694 GTTTTAACGAAAATTTGCATT 134714
||||| || ||||| ||||||
Sbjct 326 GTTTTCACAAAAATCTGCATT 346
>seq99
Length=156819
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| |
Sbjct 40115 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 40174
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | || || || | || || ||||| || |||||
Sbjct 40175 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 40234
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || ||||| |||||
Sbjct 40235 GTTTTCACAAAAATCTGCAT 40254
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| ||||| || |||||||| || || |||||||| || ||||||||||| |
Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | || || || | || || ||||| || |||||
Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948
Query 134694 GTTTTAACGAAAATTTGCATT 134714
||||| || ||||| ||||||
Sbjct 39949 GTTTTCACAAAAATCTGCATT 39969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505372346712480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |