Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1327 91.5 5e-13 >seq1327 Length=48099 Score = 91.5 bits (100), Expect = 5e-13 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 ||||| || || | || ||||| | || ||| ||||||||| || || || ||||| Sbjct 21537 GTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTC-GCGTCAATTTTCTG 21479 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 |||||||||||| || || |||| |||| |||| || || ||||| |||||| ||| || Sbjct 21478 GTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGA 21419 Query 443835 CGAGG 443839 ||||| Sbjct 21418 CGAGG 21414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588252074311180