Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24]
4,124 sequences; 49,331,761 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3725 360 6e-94
seq529 161 3e-34
seq99 156 1e-32
seq266 147 7e-30
seq3681 141 3e-28
seq3029 138 3e-27
seq2423 138 3e-27
seq1681 138 3e-27
seq3708 134 4e-26
seq2781 125 2e-23
seq1493 125 2e-23
seq1996 122 3e-22
seq2639 120 9e-22
seq3780 98.7 3e-15
seq221 89.7 2e-12
seq111 86.0 2e-11
seq2376 84.2 7e-11
>seq3725
Length=229766
Score = 360 bits (398), Expect = 6e-94
Identities = 564/804 (70%), Gaps = 5/804 (1%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||||| ||||| ||||| |||||||| || |||||||| || | || ||| |
Sbjct 191715 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 191774
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| ||||| ||||| || |||||||| || | || |||||| || ||||| || |||
Sbjct 191775 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 191834
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || || || ||||||| ||| | ||||||||||||| || ||||| | |||
Sbjct 191835 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTCGCGTTGAATCCTCATAAT 191894
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| ||||||||||| |||||||| || ||| | | ||| ||| | || |||
Sbjct 191895 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 191954
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
||| | ||||||| || || | || | || || || ||||| | ||| |
Sbjct 191955 GATATGAAACATTGGCCATTCAAAATTATC---AACGATGGATCGAAACCTAAAATTCAA 192011
Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|| ||||| ||||| || || |||| ||| |||||||| | ||||| |||
Sbjct 192012 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTTA 192071
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| || |||||||||| ||| ||||| ||||| || |||| || | ||||| || |||
Sbjct 192072 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 192131
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || || |||||||| ||| | |||||| || || ||||| ||||| | |||
Sbjct 192132 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 192191
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
| || || |||||| | | || || || ||||| || || || |||||||| |||||
Sbjct 192192 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 192251
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||||| || | ||| | ||| |||| |||| || ||||| | ||||||||||||
Sbjct 192252 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 192311
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|||||||| || | | || | ||||| || |||||||| || || | || ||||||
Sbjct 192312 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 192371
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || ||| | ||||| || || || || ||||| | || ||||| || ||
Sbjct 192372 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCCGAG 192431
Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
|||||||| |||| || | || || | |||||| | ||| |||||||| | |
Sbjct 192432 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 192490
Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001
|| || |||||||| || |||||
Sbjct 192491 CACAGCTTGTGAACGAGCGAAGCG 192514
Score = 107 bits (118), Expect = 6e-18
Identities = 191/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089
|||||||||||| || || |||| ||||||| | |||||||| | |||||
Sbjct 192603 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACAAGAGCTCGC 192662
Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147
|| ||||| || | ||| || | || | | || |||| || || |||||||
Sbjct 192663 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 192720
Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207
| ||||| ||| | |||| |||| ||||||| ||||| || || |||||||
Sbjct 192721 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGCGGTTCTA 192780
Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267
| || ||||| |||||||| |||| | || ||||||||||| ||||||| | |
Sbjct 192781 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 192840
Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304
| || ||||| || ||||||||||| ||||| ||
Sbjct 192841 AAAGCATCAATCCCGACGAAGCTGTTGCCTATGGAGC 192877
Score = 96.9 bits (106), Expect = 1e-14
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629
|| ||||||||||| ||||| | | ||||| |||| | ||||||| || || ||
Sbjct 192511 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 192452
Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689
| || | || | ||||| || | | ||||| | | | | | || || ||
Sbjct 192451 TTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTGTCGAAGTCC 192392
Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749
|||||||| ||||| || || ||||| |||| || || ||||| || || ||||| ||
Sbjct 192391 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 192332
Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
| ||||| || |||||||| ||||||||||| | |||||
Sbjct 192331 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 192291
Score = 84.2 bits (92), Expect = 7e-11
Identities = 189/279 (68%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320
|||| ||||| ||||||||||| || || || || | | ||| |||||| ||||||
Sbjct 192879 CTGCTCCATAGGCAACAGCTTCGTCGGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 192821
Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380
||||| ||| | || | |||| ||| ||||| | ||| ||||| || || || ||
Sbjct 192820 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACA 192761
Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439
||||||| || | | |||| ||||||| | ||| | | ||||||| || || ||
Sbjct 192760 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCATCACGAAGAGCTTTTTCTACTGGTTC 192702
Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499
|| ||| | || || || | |||||||| || | ||||| || | || |
Sbjct 192701 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGT 192642
Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538
| || ||||| || | || | | ||||||||||||
Sbjct 192641 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 192603
>seq529
Length=107346
Score = 161 bits (178), Expect = 3e-34
Identities = 329/485 (68%), Gaps = 8/485 (2%)
Strand=Plus/Plus
Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292
|||||| |||| | |||| |||||| ||||| ||||| |||||||| || || |||
Sbjct 45944 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 46003
Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349
|| || || || || || ||||| ||| |||||| |||| || || | || |
Sbjct 46004 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 46063
Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408
||||||| | || | | ||||| | |||||||| || ||||| ||||| | | |||
Sbjct 46064 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGT 46122
Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468
|| | || || || | ||| | |||| ||| | || ||| | || |||
Sbjct 46123 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 46182
Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528
|||| | ||||| | || || || ||| |||||| | ||| ||
Sbjct 46183 GAAAAATCGAGC---AAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTC 46239
Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588
||||||||||||||| | |||||||| | |||||||| |||||||| || || |||
Sbjct 46240 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTAT 46299
Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648
|| || || ||| | |||| || | || || ||||| ||||| || ||||| ||
Sbjct 46300 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAA 46359
Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708
||| || || |||||||| |||| |||||| || | |||||| || |||| || ||
Sbjct 46360 CGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTACGAATCATCAAC 46419
Query 349709 GAACC 349713
|||||
Sbjct 46420 GAACC 46424
>seq99
Length=156819
Score = 156 bits (172), Expect = 1e-32
Identities = 119/141 (84%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| |
Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| |||||||||||||||
Sbjct 39949 GTTTTCACAAAAATCTGCATT 39969
Score = 145 bits (160), Expect = 2e-29
Identities = 116/140 (83%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 40115 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 40174
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| |
Sbjct 40175 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 40234
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||||||||||||
Sbjct 40235 GTTTTCACAAAAATCTGCAT 40254
Score = 136 bits (150), Expect = 1e-26
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || |||||||||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||| ||||| || || | || |||||||||||||| ||||| | || ||||| ||
Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || ||||||||
Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936
>seq266
Length=548
Score = 147 bits (162), Expect = 7e-30
Identities = 117/141 (83%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 206 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 265
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| |
Sbjct 266 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 325
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| |||||||||||||||
Sbjct 326 GTTTTCACAAAAATCTGCATT 346
>seq3681
Length=661693
Score = 141 bits (156), Expect = 3e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034
Score = 138 bits (152), Expect = 3e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| ||||| | ||||| ||||| ||||| || |||| || || || ||
Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 18027 AGAGTTTTCACAAATATCTGCATT 18004
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 19269 GTCTTAACAAAAATTTGCATT 19249
Score = 131 bits (144), Expect = 5e-25
Identities = 119/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
|||| || |||||||| || | |||||| ||||| || ||||||||||| ||||||||
Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
||||| |||||||||| || || | |||||||||||| ||||| | || | || ||
Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 10347
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || || || |||||||| ||||||
Sbjct 10346 CCGGTAAGAGTCTTAACAAAAATTTGCATT 10317
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| ||
Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || ||
Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 18989 GTCTTAACGAAAATTTGCATT 18969
Score = 122 bits (134), Expect = 3e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || ||||| |||||||| || ||||| || |
Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || || |||||||||||||||| || ||||| || |
Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 18356 GTTTTCACAAATATCTGCAT 18337
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || ||
Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| |||| | |||||||||||| ||||| | || | || || || |||||
Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 19553
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 19552 GTCTTAACAAAAATTTGCATT 19532
>seq3029
Length=236
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 26 GTCTTAACAAAAATTTGCATT 6
>seq2423
Length=9717
Score = 138 bits (152), Expect = 3e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| ||||| | ||||| ||||| ||||| || |||| || || || ||
Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 3589 AGAGTTTTGACAAATATCTGCATT 3612
Score = 125 bits (138), Expect = 2e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651
|| || |||||||| || | |||||| ||||| || |||||||| |||||||| ||||||
Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380
Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711
|| |||| ||||| || || | |||||||||||| ||||| | || | ||| |||||
Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 2440
Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||| ||||||
Sbjct 2441 GTAAGGGTCTTAACGAAAATTTGCATT 2467
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || || || |||||||| || ||||| || |
Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || || |||||||||||||||| || ||||| || |
Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 3260 GTTTTCACAAATATCTGCAT 3279
>seq1681
Length=34527
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||||||||| ||||| || ||
Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700
Score = 131 bits (144), Expect = 5e-25
Identities = 119/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
|||| || |||||||| || | |||||| ||||| || ||||||||||| ||||||||
Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
||||| |||||||||| || || | |||||||||||| ||||| | || | || ||
Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 30013
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || || || |||||||| ||||||
Sbjct 30012 CCGGTAAGAGTCTTAACAAAAATTTGCATT 29983
>seq3708
Length=1771
Score = 134 bits (148), Expect = 4e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 1757
Query 140718 GTTTTTACAAAAAT 140731
|| || ||||||||
Sbjct 1758 GTCTTAACAAAAAT 1771
Score = 129 bits (142), Expect = 2e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| ||||| || || | |||||||||||| || ||||||||||| |||||||| |||||
Sbjct 1352 TTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 1411
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||||||||| || || | |||||||||||| ||||| | || | || || |||||
Sbjct 1412 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 1471
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| || || |||||||| ||||||
Sbjct 1472 AGAGTCTTAACAAAAATTTGCATT 1495
>seq2781
Length=253
Score = 125 bits (138), Expect = 2e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651
|| || |||||||| || | |||||| ||||| || |||||||| |||||||| ||||||
Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126
Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711
|| |||| ||||| || || | |||||||||||| ||||| | || | ||| |||||
Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 66
Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||| ||||||
Sbjct 65 GTAAGGGTCTTAACGAAAATTTGCATT 39
>seq1493
Length=366
Score = 125 bits (138), Expect = 2e-23
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|||||||| ||||| || ||||||||||||||||| |||||||| |||||||||| ||
Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | |||||||||||| ||||| | || | || || |||||||| || || || |||
Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247
Query 140730 ATCTGCATT 140738
|| ||||||
Sbjct 246 ATTTGCATT 238
Score = 118 bits (130), Expect = 3e-21
Identities = 83/95 (87%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct 95 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 36
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692
|||||||| || || | |||||||||||| |||||
Sbjct 35 TTTACATTCTCTATTGTATCAGATGGTTCTACTTC 1
>seq1996
Length=320
Score = 122 bits (134), Expect = 3e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 184 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 243
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||||||||| || || | |||||||||||| ||||| | || | || || |||||
Sbjct 244 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 303
Query 140715 AGTGTTTTTACAAAAAT 140731
|| || || ||||||||
Sbjct 304 AGAGTCTTAACAAAAAT 320
>seq2639
Length=264
Score = 120 bits (132), Expect = 9e-22
Identities = 104/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|||||||| ||||| || ||||||||||||||||| |||||||| |||||||||| ||
Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | |||||||||||| ||||| | || | || || ||||| || || || || |||
Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145
Query 140730 ATCTGCATT 140738
|| ||||||
Sbjct 144 ATTTGCATT 136
>seq3780
Length=218817
Score = 98.7 bits (108), Expect = 3e-15
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607
|||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| |
Sbjct 71250 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 71191
Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636
| || || ||||||||||| ||||| |||
Sbjct 71190 TCAGTCGCTGCTGATCAGGTGGAATCCCT 71162
Score = 89.7 bits (98), Expect = 2e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693
||||| || |||||||||||||| || ||||| | ||| | |||||| || || |||||
Sbjct 71115 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 71056
Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || | |||||||| ||||| ||||| ||||| || |||||
Sbjct 71055 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 71012
>seq221
Length=592934
Score = 89.7 bits (98), Expect = 2e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032
|| || || |||||| | ||||| ||||| || || || |||||||| | ||| || |
Sbjct 22533 ATTGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 22592
Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092
|||| | |||||||| | || || || | || || ||||| || ||||| ||
Sbjct 22593 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACAC 22652
Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124
|| ||||||||||| ||||| |||||||| ||
Sbjct 22653 GCAATTCCTAGTCGAATGACCATTGGTCATTT 22684
>seq111
Length=593702
Score = 86.0 bits (94), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956
||| | ||||| || || || ||||| ||| | |||||||||| ||||| |||||
Sbjct 137640 GAAGTGAAAGTCGCTCAGCTTGCTGGTTCCGTTGCTGAACATTCAGCTTATCACCACGGC 137699
Query 67957 GAAGCTAGTTTAAATTCATCA--ATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014
|||| ||| | | | | || ||| || ||| ||||| |||||||| || ||||
Sbjct 137700 GAAGTCAGTCTGA--TGAGCACCATTATAAATTTGGCTCATAATTTTGTGGGCAGCAATA 137757
Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074
| || || || | ||| | ||||||||||| ||| || | || || || | |||||
Sbjct 137758 ACATCAACATATTGCTACCGATTGGTCAATTTGGCACTCGACTTCTCGGCGGCAGAGATG 137817
Query 68075 CTGCATCTGAAAGATATATATTTAC 68099
| || || |||||| || |||||
Sbjct 137818 CGGCCAGTGCAAGATACATTTTTAC 137842
>seq2376
Length=286
Score = 84.2 bits (92), Expect = 7e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 140657 TTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
||| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| ||||
Sbjct 3 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 62
Query 140717 TGTTTTTACAAAAATCTGCAT 140737
|||||| ||||||||||||||
Sbjct 63 TGTTTTCACAAAAATCTGCAT 83
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515174335851572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |