Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3725 360 6e-94 seq529 161 3e-34 seq99 156 1e-32 seq266 147 7e-30 seq3681 141 3e-28 seq3029 138 3e-27 seq2423 138 3e-27 seq1681 138 3e-27 seq3708 134 4e-26 seq2781 125 2e-23 seq1493 125 2e-23 seq1996 122 3e-22 seq2639 120 9e-22 seq3780 98.7 3e-15 seq221 89.7 2e-12 seq111 86.0 2e-11 seq2376 84.2 7e-11 >seq3725 Length=229766 Score = 360 bits (398), Expect = 6e-94 Identities = 564/804 (70%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 191715 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 191774 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || |||||||| || | || |||||| || ||||| || ||| Sbjct 191775 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 191834 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | ||||||||||||| || ||||| | ||| Sbjct 191835 GATACCGAACGACTGATTGGAGATGCGGCAAAAAATCAAGTCGCGTTGAATCCTCATAAT 191894 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| |||||||| || ||| | | ||| ||| | || ||| Sbjct 191895 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 191954 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | ||||||| || || | || | || || || ||||| | ||| | Sbjct 191955 GATATGAAACATTGGCCATTCAAAATTATC---AACGATGGATCGAAACCTAAAATTCAA 192011 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 192012 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTTA 192071 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | ||||| || ||| Sbjct 192072 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 192131 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 192132 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 192191 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | | || || || ||||| || || || |||||||| ||||| Sbjct 192192 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 192251 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | |||||||||||| Sbjct 192252 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 192311 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | ||||| || |||||||| || || | || |||||| Sbjct 192312 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 192371 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || ||| | ||||| || || || || ||||| | || ||||| || || Sbjct 192372 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCCGAG 192431 Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 |||||||| |||| || | || || | |||||| | ||| |||||||| | | Sbjct 192432 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 192490 Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || ||||| Sbjct 192491 CACAGCTTGTGAACGAGCGAAGCG 192514 Score = 107 bits (118), Expect = 6e-18 Identities = 191/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 |||||||||||| || || |||| ||||||| | |||||||| | ||||| Sbjct 192603 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACAAGAGCTCGC 192662 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 || ||||| || | ||| || | || | | || |||| || || ||||||| Sbjct 192663 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 192720 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| ||| | |||| |||| ||||||| ||||| || || ||||||| Sbjct 192721 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGCGGTTCTA 192780 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || ||||| |||||||| |||| | || ||||||||||| ||||||| | | Sbjct 192781 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 192840 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || ||||| || ||||||||||| ||||| || Sbjct 192841 AAAGCATCAATCCCGACGAAGCTGTTGCCTATGGAGC 192877 Score = 96.9 bits (106), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629 || ||||||||||| ||||| | | ||||| |||| | ||||||| || || || Sbjct 192511 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 192452 Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689 | || | || | ||||| || | | ||||| | | | | | || || || Sbjct 192451 TTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTGTCGAAGTCC 192392 Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749 |||||||| ||||| || || ||||| |||| || || ||||| || || ||||| || Sbjct 192391 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 192332 Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||| || |||||||| ||||||||||| | ||||| Sbjct 192331 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 192291 Score = 84.2 bits (92), Expect = 7e-11 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320 |||| ||||| ||||||||||| || || || || | | ||| |||||| |||||| Sbjct 192879 CTGCTCCATAGGCAACAGCTTCGTCGGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 192821 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 ||||| ||| | || | |||| ||| ||||| | ||| ||||| || || || || Sbjct 192820 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACA 192761 Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 ||||||| || | | |||| ||||||| | ||| | | ||||||| || || || Sbjct 192760 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCATCACGAAGAGCTTTTTCTACTGGTTC 192702 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || ||| | || || || | |||||||| || | ||||| || | || | Sbjct 192701 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGT 192642 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538 | || ||||| || | || | | |||||||||||| Sbjct 192641 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 192603 >seq529 Length=107346 Score = 161 bits (178), Expect = 3e-34 Identities = 329/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || ||| Sbjct 45944 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 46003 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| |||||| |||| || || | || | Sbjct 46004 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 46063 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||| ||||| | | ||| Sbjct 46064 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGT 46122 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || || || | ||| | |||| ||| | || ||| | || ||| Sbjct 46123 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 46182 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| | ||||| | || || || ||| |||||| | ||| || Sbjct 46183 GAAAAATCGAGC---AAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTC 46239 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| || || ||| Sbjct 46240 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTAT 46299 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || ||||| ||||| || ||||| || Sbjct 46300 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAA 46359 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | |||||| || |||| || || Sbjct 46360 CGTCAAGCTACCAAAGATGCAGGCACCATTGCTGGTCTTAATGTTGTACGAATCATCAAC 46419 Query 349709 GAACC 349713 ||||| Sbjct 46420 GAACC 46424 >seq99 Length=156819 Score = 156 bits (172), Expect = 1e-32 Identities = 119/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 39829 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 39888 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 39889 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 39948 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||||||||||||| Sbjct 39949 GTTTTCACAAAAATCTGCATT 39969 Score = 145 bits (160), Expect = 2e-29 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 40115 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 40174 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 40175 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 40234 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 40235 GTTTTCACAAAAATCTGCAT 40254 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 40794 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 40853 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 40854 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 40913 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || |||||||| Sbjct 40914 AGTGTCTTCACGAATATCTGCAT 40936 >seq266 Length=548 Score = 147 bits (162), Expect = 7e-30 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 206 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 265 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 266 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 325 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||||||||||||| Sbjct 326 GTTTTCACAAAAATCTGCATT 346 >seq3681 Length=661693 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 10174 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 10115 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 10114 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 10055 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 10054 GTCTTAACAAAAATTTGCATT 10034 Score = 138 bits (152), Expect = 3e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 18147 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 18088 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | ||||| ||||| ||||| || |||| || || || || Sbjct 18087 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 18028 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 18027 AGAGTTTTCACAAATATCTGCATT 18004 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 19389 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19330 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 19329 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19270 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 19269 GTCTTAACAAAAATTTGCATT 19249 Score = 131 bits (144), Expect = 5e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 |||| || |||||||| || | |||||| ||||| || ||||||||||| |||||||| Sbjct 10466 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 10407 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 ||||| |||||||||| || || | |||||||||||| ||||| | || | || || Sbjct 10406 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 10347 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || || |||||||| |||||| Sbjct 10346 CCGGTAAGAGTCTTAACAAAAATTTGCATT 10317 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 19109 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 19050 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || || Sbjct 19049 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 18990 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 18989 GTCTTAACGAAAATTTGCATT 18969 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || ||||| |||||||| || ||||| || | Sbjct 18476 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 18417 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 18416 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 18357 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 18356 GTTTTCACAAATATCTGCAT 18337 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 19672 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 19613 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| |||| | |||||||||||| ||||| | || | || || || ||||| Sbjct 19612 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 19553 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 19552 GTCTTAACAAAAATTTGCATT 19532 >seq3029 Length=236 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 146 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 87 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 86 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 27 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 26 GTCTTAACAAAAATTTGCATT 6 >seq2423 Length=9717 Score = 138 bits (152), Expect = 3e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 3469 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 3528 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | ||||| ||||| ||||| || |||| || || || || Sbjct 3529 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 3588 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 3589 AGAGTTTTGACAAATATCTGCATT 3612 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || |||||||| |||||||| |||||| Sbjct 2321 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 2380 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| Sbjct 2381 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 2440 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 2441 GTAAGGGTCTTAACGAAAATTTGCATT 2467 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || || || |||||||| || ||||| || | Sbjct 3140 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 3199 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 3200 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 3259 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 3260 GTTTTCACAAATATCTGCAT 3279 >seq1681 Length=34527 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| ||||| || || Sbjct 29840 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTGCCT 29781 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 29780 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 29721 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 29720 GTCTTAACAAAAATTTGCATT 29700 Score = 131 bits (144), Expect = 5e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 |||| || |||||||| || | |||||| ||||| || ||||||||||| |||||||| Sbjct 30132 AGTTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 30073 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 ||||| |||||||||| || || | |||||||||||| ||||| | || | || || Sbjct 30072 ATTTTCCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTG 30013 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || || |||||||| |||||| Sbjct 30012 CCGGTAAGAGTCTTAACAAAAATTTGCATT 29983 >seq3708 Length=1771 Score = 134 bits (148), Expect = 4e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 1638 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 1697 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 1698 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 1757 Query 140718 GTTTTTACAAAAAT 140731 || || |||||||| Sbjct 1758 GTCTTAACAAAAAT 1771 Score = 129 bits (142), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||| || || | |||||||||||| || ||||||||||| |||||||| ||||| Sbjct 1352 TTACCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 1411 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 1412 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 1471 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 1472 AGAGTCTTAACAAAAATTTGCATT 1495 >seq2781 Length=253 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || |||||||| |||||||| |||||| Sbjct 185 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 126 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| Sbjct 125 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 66 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 65 GTAAGGGTCTTAACGAAAATTTGCATT 39 >seq1493 Length=366 Score = 125 bits (138), Expect = 2e-23 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 |||||||| ||||| || ||||||||||||||||| |||||||| |||||||||| || Sbjct 366 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 307 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | |||||||||||| ||||| | || | || || |||||||| || || || ||| Sbjct 306 ATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTGCCGGTTAGAGTCTTAACGAAA 247 Query 140730 ATCTGCATT 140738 || |||||| Sbjct 246 ATTTGCATT 238 Score = 118 bits (130), Expect = 3e-21 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || Sbjct 95 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 36 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 |||||||| || || | |||||||||||| ||||| Sbjct 35 TTTACATTCTCTATTGTATCAGATGGTTCTACTTC 1 >seq1996 Length=320 Score = 122 bits (134), Expect = 3e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 184 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 243 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 244 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 303 Query 140715 AGTGTTTTTACAAAAAT 140731 || || || |||||||| Sbjct 304 AGAGTCTTAACAAAAAT 320 >seq2639 Length=264 Score = 120 bits (132), Expect = 9e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 |||||||| ||||| || ||||||||||||||||| |||||||| |||||||||| || Sbjct 264 AGACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACATTCTCT 205 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | |||||||||||| ||||| | || | || || ||||| || || || || ||| Sbjct 204 ATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGGGTCTTAACGAAA 145 Query 140730 ATCTGCATT 140738 || |||||| Sbjct 144 ATTTGCATT 136 >seq3780 Length=218817 Score = 98.7 bits (108), Expect = 3e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| | Sbjct 71250 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 71191 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||| ||||| ||| Sbjct 71190 TCAGTCGCTGCTGATCAGGTGGAATCCCT 71162 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || |||||||||||||| || ||||| | ||| | |||||| || || ||||| Sbjct 71115 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 71056 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 71055 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 71012 >seq221 Length=592934 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || || |||||| | ||||| ||||| || || || |||||||| | ||| || | Sbjct 22533 ATTGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 22592 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 |||| | |||||||| | || || || | || || ||||| || ||||| || Sbjct 22593 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACAC 22652 Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || ||||||||||| ||||| |||||||| || Sbjct 22653 GCAATTCCTAGTCGAATGACCATTGGTCATTT 22684 >seq111 Length=593702 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956 ||| | ||||| || || || ||||| ||| | |||||||||| ||||| ||||| Sbjct 137640 GAAGTGAAAGTCGCTCAGCTTGCTGGTTCCGTTGCTGAACATTCAGCTTATCACCACGGC 137699 Query 67957 GAAGCTAGTTTAAATTCATCA--ATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATA 68014 |||| ||| | | | | || ||| || ||| ||||| |||||||| || |||| Sbjct 137700 GAAGTCAGTCTGA--TGAGCACCATTATAAATTTGGCTCATAATTTTGTGGGCAGCAATA 137757 Query 68015 ATATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATG 68074 | || || || | ||| | ||||||||||| ||| || | || || || | ||||| Sbjct 137758 ACATCAACATATTGCTACCGATTGGTCAATTTGGCACTCGACTTCTCGGCGGCAGAGATG 137817 Query 68075 CTGCATCTGAAAGATATATATTTAC 68099 | || || |||||| || ||||| Sbjct 137818 CGGCCAGTGCAAGATACATTTTTAC 137842 >seq2376 Length=286 Score = 84.2 bits (92), Expect = 7e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 140657 TTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||| Sbjct 3 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 62 Query 140717 TGTTTTTACAAAAATCTGCAT 140737 |||||| |||||||||||||| Sbjct 63 TGTTTTCACAAAAATCTGCAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515174335851572