Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2423 123 3e-23 seq3681 118 1e-21 seq3029 114 1e-20 seq1681 109 6e-19 seq2781 107 2e-18 seq1327 107 2e-18 seq3708 105 8e-18 seq1996 93.3 5e-14 seq99 93.3 5e-14 seq3780 82.4 9e-11 >seq2423 Length=9717 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || || || || || |||||||| || || || | Sbjct 3612 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 3553 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 3552 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 3493 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 3492 ACAACGTCTGATTTTTGCTGGTAAGTAA 3465 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 2467 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 2408 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 2407 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 2348 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 2347 ACAACGTTTGATTTTTGCTGGTAAGCA 2321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 3279 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 3220 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || ||||| || Sbjct 3219 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 3160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 3159 CAGCGGCTTATTTTTGCTGGTATGC 3135 >seq3681 Length=661693 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 18004 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 18063 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 18064 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 18123 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 18124 ACAACGTCTGATTTTTGCTGGTAAGTAA 18151 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 19249 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 19308 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 19309 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 19368 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 19369 GCAACGTCTGATTTTTGCTGGTA 19391 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 10034 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 10093 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | |||||||| || || || |||||||| ||||| || Sbjct 10094 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 10153 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 10154 GCAACGTCTGATTTTTGCTGGTA 10176 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 10317 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 10376 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 10377 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 10436 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || ||| | ||||||||||||||| |||| Sbjct 10437 ACAACGTTTGATTTTTGCTGGTAAGTAACT 10466 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || || || || || || | || || || || Sbjct 19532 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 19591 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| || Sbjct 19592 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 19651 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| ||||||||||||| Sbjct 19652 ACAGCGTCTGATTTTTGCTGGTA 19674 Score = 105 bits (116), Expect = 8e-18 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 18969 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19028 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || || Sbjct 19029 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 19088 Query 27525 GCAGCGTCTAATTTTTGCTGGT-AAGCA 27551 || ||| | |||||||||||| ||||| Sbjct 19089 ACAACGTTTGATTTTTGCTGGTGAAGCA 19116 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 18337 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 18396 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || ||||| || || || Sbjct 18397 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAA 18456 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 18457 CAGCGGCTTATTTTTGCTGGTATGC 18481 >seq3029 Length=236 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 65 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 66 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 125 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 126 GCAACGTCTGATTTTTGCTGGTA 148 >seq1681 Length=34527 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 29983 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 30042 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 30043 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 30102 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 || ||| | ||||||||||||||| |||| Sbjct 30103 ACAACGTTTGATTTTTGCTGGTAAGTAACT 30132 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 29700 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 29759 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | || ||||| || || || |||||||| ||||| || Sbjct 29760 TGATACAATAGAGAATGTAAAAGGCAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 29819 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 29820 GCAACGTCTGATTTTTGCTGGTA 29842 >seq2781 Length=253 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 39 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 98 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 99 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 158 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 159 ACAACGTTTGATTTTTGCTGGTAAGCA 185 >seq1327 Length=48099 Score = 107 bits (118), Expect = 2e-18 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641 ||| |||| |||| | | || ||||| || ||| ||| ||||||| || || Sbjct 21681 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 21622 Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 ||||| | || || | ||||| || || ||||| | || ||||| | ||| Sbjct 21621 GAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 21562 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 |||| | ||| | | ||| | | || || || ||| ||||| ||||||||||| Sbjct 21561 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCC 21502 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || ||| || ||||||||| | |||||||| ||||||||||| ||| || |||| Sbjct 21501 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 21442 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||||||||||| ||||||| Sbjct 21441 AGCAACGAGCTGATCTCTCGTGACGAGG 21414 >seq3708 Length=1771 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 1495 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 1436 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 1435 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 1376 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| ||| | ||||| ||||||||| || Sbjct 1375 GCAACGTTTGATTTTCGCTGGTAAGTAA 1348 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || ||||| ||||| ||||||||||| || || || | || || || || ||||| Sbjct 1771 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 1712 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | ||| | || | |||||||| || || || |||||||| ||||| ||||| ||| Sbjct 1711 ATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGT 1652 Query 27532 CTAATTTTTGCTGGTA 27547 || ||||||||||||| Sbjct 1651 CTGATTTTTGCTGGTA 1636 >seq1996 Length=320 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || ||||| ||||| ||||||||||| || || || | || || || || ||||| Sbjct 320 ATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGATACA 261 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | ||| | || | ||||| ||||| ||||| |||||||| || || || || ||| Sbjct 260 ATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAACGT 201 Query 27532 CTAATTTTTGCTGGTAAGCAA 27552 | ||||||||||||||| || Sbjct 200 TTGATTTTTGCTGGTAAGTAA 180 >seq99 Length=156819 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| || || ||||| || || || ||||| || Sbjct 40939 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 40880 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | || |||||||||||| ||||| || |||||||| || Sbjct 40879 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 40820 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 40819 CAGCAAAGATTAATCTTTGCAGGTAA 40794 >seq3780 Length=218817 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 27394 AATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 |||||| | || |||||||| ||||| || || || || || ||||| || ||| | || Sbjct 70999 AATATTTATTTAGATGCAAATATTTGTGAAAACCCTAACAGGAAAGACCATCACTTTGGA 71058 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || ||| | ||||| ||| ||| ||||||||||||||||||||||||| || Sbjct 71059 AGTGGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 71115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281000498880