Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq266 82.4 5e-11 seq99 82.4 5e-11 >seq266 Length=548 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| |||||||| || || || || || ||||| | || ||||| ||| ||| ||| Sbjct 204 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCT-TGAATTTTA 262 Query 34625 GTTTTAACGATAA-AATTGTGTCT--TCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 |||| || | ||| || ||| | ||||| ||||||| || || ||||| || | Sbjct 263 CTTTTCACATTTTCAATCGTATCTGATGGCTCT--ACTTCCAATGTGATTGTTTTTCCAG 320 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||||||||||||||| Sbjct 321 TTAATGTTTTCACAAAAATCTGCAT 345 >seq99 Length=156819 Score = 82.4 bits (90), Expect = 5e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| |||||||| || || || || || ||||| | || ||||| ||| ||| ||| Sbjct 40113 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCT-TGAATTTTA 40171 Query 34625 GTTTTAACGATAA-AATTGTGTCT--TCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 |||| || | ||| || ||| | ||||| ||||||| || || ||||| || | Sbjct 40172 CTTTTCACATTTTCAATCGTATCTGATGGCTCT--ACTTCCAATGTGATTGTTTTTCCAG 40229 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||||||||||||||| Sbjct 40230 TTAATGTTTTCACAAAAATCTGCAT 40254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314713781296892